UHGV-1482458

Genome information

Genome length 39,173 bps

CDS count 47

Completeness 93.34% (high-quality)

geNomad score 0.9589

Prediction confidence Confident

Genome information
Genome ID	UHGV-1482458
vOTU ID	vOTU-013494
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0264118
BioSample	SAMEA2582087
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.34% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9589
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.29
Jumbo phage	No

Genome content
Genome length	39,173 bps
GC content	46.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.16%
Average CDS length	770.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1482458_1	UniRef90	UniRef90_A0A1J0DF30	3-deoxy-D-manno-octulosonic acid transferase	NA
UHGV-1482458_1	eggNOG-mapper	367737.Abu_1708	NA	NA
UHGV-1482458_1	Pfam	PF12686	NA	DUF3800
UHGV-1482458_4	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1482458_4	PHROG	phrog_7	endolysin	lysis
UHGV-1482458_4	UniRef90	UniRef90_D9Y906	Lysozyme	NA
UHGV-1482458_4	eggNOG-mapper	469610.HMPREF0189_02350	Phage lysozyme	NA
UHGV-1482458_4	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1482458_4	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1482458_4	HAMAP	MF_04110	Endolysin	NA
UHGV-1482458_4	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-1482458_5	PHROG	phrog_785	holin	lysis
UHGV-1482458_5	eggNOG-mapper	742823.HMPREF9465_00919	LydA holin phage, holin superfamily III	NA
UHGV-1482458_5	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-1482458_5	Structural annotation	PF16083, TIGR01594	NA	NA
UHGV-1482458_6	eggNOG-mapper	762966.HMPREF9439_01451	ftsk spoiiie	NA
UHGV-1482458_6	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1482458_6	COG	COG1040	DNA utilization protein ComFC/GntX, contains phosphoribosyltransferase domain	NA
UHGV-1482458_7	PHROG	phrog_5143	NA	unknown function
UHGV-1482458_7	eggNOG-mapper	1008459.TASI_0462	lyase activity	NA
UHGV-1482458_7	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-1482458_7	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1482458_9	eggNOG-mapper	204773.HEAR2269	NA	NA
UHGV-1482458_10	PHROG	phrog_12032	short tail fiber protein	tail
UHGV-1482458_10	UniRef90	UniRef90_Q775C1	Bbp23	NA
UHGV-1482458_10	Structural annotation	PF11699, MF_01255, NF009806, COG4766	NA	NA
UHGV-1482458_11	eggNOG-mapper	556268.OFAG_00937	NA	NA
UHGV-1482458_12	eggNOG-mapper	556269.ACDQ01000006_gene1593	NA	NA
UHGV-1482458_12	Structural annotation	PF02799, MF_02210, NF007530, COG3153	NA	NA
UHGV-1482458_13	eggNOG-mapper	556269.ACDQ01000006_gene1592	NA	NA
UHGV-1482458_13	Structural annotation	PF11134, MF_01605, NF000022, NF033675, COG5276	NA	NA
UHGV-1482458_14	eggNOG-mapper	556268.OFAG_00941	NA	NA
UHGV-1482458_14	Structural annotation	PF20387, TIGR02215	NA	NA
UHGV-1482458_15	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-1482458_15	PHROG	phrog_819	tail protein	tail
UHGV-1482458_15	UniRef90	UniRef90_UPI0019614AE9	collagen-like protein	NA
UHGV-1482458_15	eggNOG-mapper	556269.ACDQ01000006_gene1587	tail collar domain protein	NA
UHGV-1482458_15	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1482458_15	COG	COG4675	Phage tail collar domain	NA
UHGV-1482458_17	PHROG	phrog_3342	NA	unknown function
UHGV-1482458_17	UniRef90	UniRef90_A0A6L6YMG8	Pseudouridine synthase	NA
UHGV-1482458_17	eggNOG-mapper	563192.HMPREF0179_01734	NA	NA
UHGV-1482458_18	UniRef90	UniRef90_UPI00195F3393	NA	NA
UHGV-1482458_18	Pfam	PF14301	NA	DUF4376
UHGV-1482458_18	Structural annotation	PF14301	NA	NA
UHGV-1482458_19	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1482458_20	eggNOG-mapper	469610.HMPREF0189_01118	NA	NA
UHGV-1482458_22	PHROG	phrog_9953	major head protein	head and packaging
UHGV-1482458_22	UniRef90	UniRef90_UPI000ADD8E8A	phage major capsid protein	NA
UHGV-1482458_22	eggNOG-mapper	1562701.BBOF01000081_gene253	NA	NA
UHGV-1482458_22	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-1482458_22	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-1482458_23	UniRef90	UniRef90_A0A7W8M809	DNA-binding protein H-NS	NA
UHGV-1482458_23	eggNOG-mapper	1562701.BBOF01000081_gene250	NA	NA
UHGV-1482458_24	PHROG	phrog_12082	portal protein	head and packaging
UHGV-1482458_24	eggNOG-mapper	204773.HEAR2283	NA	NA
UHGV-1482458_24	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1482458_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1482458_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1482458_25	UniRef90	UniRef90_C3X8X3	Putative phage terminase, large subunit, PBSX family	NA
UHGV-1482458_25	eggNOG-mapper	556268.OFAG_00922	Terminase-like family	NA
UHGV-1482458_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-1482458_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1482458_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1482458_26	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1482458_26	UniRef90	UniRef90_UPI001BD5ADDD	endodeoxyribonuclease RusA	NA
UHGV-1482458_26	eggNOG-mapper	743721.Psesu_1152	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1482458_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1482458_28	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1482458_28	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1482458_28	UniRef90	UniRef90_F3QJB7	IstB-like ATP-binding protein	NA
UHGV-1482458_28	eggNOG-mapper	762966.HMPREF9439_01018	IstB-like ATP binding protein	NA
UHGV-1482458_28	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1482458_28	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1482458_28	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-1482458_29	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1482458_29	UniRef90	UniRef90_A0A5B3FNM4	Helix-turn-helix domain-containing protein	NA
UHGV-1482458_29	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1482458_29	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-1482458_29	Structural annotation	PF10007, MF_01909, TIGR01610, COG4738	NA	NA
UHGV-1482458_30	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-1482458_30	UniRef90	UniRef90_R5EI22	Predicted DNA-binding transcriptional regulator	NA
UHGV-1482458_30	eggNOG-mapper	1380387.JADM01000008_gene962	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-1482458_30	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-1482458_30	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-1482458_30	Structural annotation	PF15943, NF041951, COG4197	NA	NA
UHGV-1482458_31	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1482458_31	UniRef90	UniRef90_R5EG02	Putative phage repressor	NA
UHGV-1482458_31	eggNOG-mapper	397945.Aave_3589	peptidase	NA
UHGV-1482458_31	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1482458_31	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1482458_31	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1482458_33	KOfam	K07816	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	NA
UHGV-1482458_33	PHROG	phrog_4773	NA	unknown function
UHGV-1482458_33	UniRef90	UniRef90_A0A6L6YI53	(P)ppGpp synthetase	NA
UHGV-1482458_33	eggNOG-mapper	1029823.AFIE01000022_gene955	Region found in RelA / SpoT proteins	NA
UHGV-1482458_33	Pfam	PF04607	Region found in RelA / SpoT proteins	RelA_SpoT
UHGV-1482458_33	COG	COG2357	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	NA
UHGV-1482458_33	Structural annotation	PF04607, TIGR00691, COG2357	NA	NA
UHGV-1482458_37	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1482458_37	UniRef90	UniRef90_A0A6J5P5S3	Essential recombination function protein	NA
UHGV-1482458_37	eggNOG-mapper	1207076.ALAT01000105_gene1941	ERF superfamily	NA
UHGV-1482458_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-1482458_37	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-1482458_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1482458_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1482458_38	UniRef90	UniRef90_F3QNN6	Single-stranded DNA-binding protein	NA
UHGV-1482458_38	eggNOG-mapper	469610.HMPREF0189_01394	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1482458_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1482458_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1482458_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1482458_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1482458_38	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1482458_39	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1482458_39	UniRef90	UniRef90_A0A6J5L191	Siphovirus Gp157	NA
UHGV-1482458_39	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1482458_39	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1482458_41	Structural annotation	MF_04067	NA	NA
UHGV-1482458_44	PHROG	phrog_1485	NA	unknown function
UHGV-1482458_44	UniRef90	UniRef90_UPI0019D50843	nucleotide modification associated domain-containing protein	NA
UHGV-1482458_44	eggNOG-mapper	1444310.JANV01000096_gene3245	NA	NA
UHGV-1482458_44	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-1482458_45	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1482458_46	eggNOG-mapper	762966.HMPREF9439_00980	NA	NA
UHGV-1482458_46	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-1482458_47	KOfam	K14059	int; integrase	NA
UHGV-1482458_47	PHROG	phrog_1	integrase	integration and excision
UHGV-1482458_47	UniRef90	UniRef90_F3QJ78	Site-specific recombinase, phage integrase family	NA
UHGV-1482458_47	eggNOG-mapper	469610.HMPREF0189_01147	Belongs to the 'phage' integrase family	NA
UHGV-1482458_47	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1482458_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1482458_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1482458_47	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA