UHGV-1482692

Genome information

Genome length 16,765 bps

CDS count 20

Completeness 80.14% (medium-quality)

geNomad score 0.9488

Prediction confidence Confident

Genome information
Genome ID	UHGV-1482692
vOTU ID	vOTU-031801
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0114464
BioSample	SAMEA2338857
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9488
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.33
Jumbo phage	No

Genome content
Genome length	16,765 bps
GC content	48.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	90.62%
Average CDS length	762.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1482692_1	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1482692_1	PHROG	phrog_380	endolysin	lysis
UHGV-1482692_1	UniRef90	UniRef90_A0A412AY89	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1482692_1	eggNOG-mapper	1216932.CM240_0631	Ami_2	NA
UHGV-1482692_1	Pfam	PF01476	LysM domain	LysM
UHGV-1482692_1	COG	COG1388	LysM repeat	NA
UHGV-1482692_2	PHROG	phrog_2308	NA	unknown function
UHGV-1482692_2	UniRef90	UniRef90_R7EV01	Deoxyribose-phosphate aldolase	NA
UHGV-1482692_2	eggNOG-mapper	158190.SpiGrapes_2798	recombinase activity	NA
UHGV-1482692_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1482692_2	Structural annotation	PF06056, COG2771	NA	NA
UHGV-1482692_3	PHROG	phrog_2996	NA	unknown function
UHGV-1482692_3	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-1482692_3	Structural annotation	PF20612	NA	NA
UHGV-1482692_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1482692_4	PHROG	phrog_95	integrase	integration and excision
UHGV-1482692_4	UniRef90	UniRef90_R7EV05	Resolvase domain protein	NA
UHGV-1482692_4	eggNOG-mapper	1378168.N510_01583	resolvase	NA
UHGV-1482692_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1482692_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-1482692_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1482692_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1482692_4	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1482692_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1482692_5	PHROG	phrog_95	integrase	integration and excision
UHGV-1482692_5	UniRef90	UniRef90_A0A847BN55	Recombinase family protein (Fragment)	NA
UHGV-1482692_5	eggNOG-mapper	1378168.N510_01584	resolvase	NA
UHGV-1482692_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1482692_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1482692_5	Structural annotation	PF00239, MF_00549, NF033518, COG1961	NA	NA
UHGV-1482692_6	UniRef90	UniRef90_A0A1Y0I5J3	Membrane protein	NA
UHGV-1482692_6	PADLOC	REase_II_00007	Type II restriction enzyme	RM
UHGV-1482692_7	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1482692_7	PHROG	phrog_1600	DNA methyltransferase	other
UHGV-1482692_7	UniRef90	UniRef90_A0A2K0XA42	Restriction endonuclease	NA
UHGV-1482692_7	eggNOG-mapper	1235793.C809_01854	DNA restriction-modification system	NA
UHGV-1482692_7	PADLOC	PglX_00007	PglX	BREX
UHGV-1482692_7	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1482692_7	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1482692_8	PHROG	phrog_25	head closure Hc1	connector
UHGV-1482692_8	UniRef90	UniRef90_UPI001F1DEF54	phage head closure protein	NA
UHGV-1482692_8	eggNOG-mapper	457415.HMPREF1006_01810	Phage head-tail joining protein	NA
UHGV-1482692_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1482692_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1482692_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1482692_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1482692_9	UniRef90	UniRef90_UPI001F39D84F	terminase large subunit	NA
UHGV-1482692_9	eggNOG-mapper	457415.HMPREF1006_01809	Terminase	NA
UHGV-1482692_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1482692_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1482692_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1482692_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1482692_12	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1482692_12	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1482692_12	UniRef90	UniRef90_A0A7W8CYD2	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1482692_12	eggNOG-mapper	457415.HMPREF1006_01807	endonuclease activity	NA
UHGV-1482692_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1482692_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1482692_13	UniRef90	UniRef90_UPI001F379D96	head-tail connector protein	NA
UHGV-1482692_13	eggNOG-mapper	1567011.A0A0A7RWM0_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-1482692_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1482692_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1482692_14	KOfam	K06904	NA	NA
UHGV-1482692_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-1482692_14	UniRef90	UniRef90_UPI001F2933C4	phage major capsid protein	NA
UHGV-1482692_14	eggNOG-mapper	457415.HMPREF1006_01805	Phage capsid family	NA
UHGV-1482692_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1482692_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1482692_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1482692_14	COG	COG3740	Phage head maturation protease	NA
UHGV-1482692_14	Structural annotation	PF04586, PF05065, MF_04119, TIGR01554, TIGR01543, COG3740, COG4653	NA	NA
UHGV-1482692_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-1482692_15	UniRef90	UniRef90_UPI001F32DF03	phage portal protein	NA
UHGV-1482692_15	eggNOG-mapper	457415.HMPREF1006_01804	Portal protein	NA
UHGV-1482692_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1482692_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1482692_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1482692_16	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1482692_16	UniRef90	UniRef90_A0A7W8FU46	PriCT_1 domain-containing protein	NA
UHGV-1482692_16	eggNOG-mapper	693746.OBV_01820	Virulence-associated protein E	NA
UHGV-1482692_16	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1482692_16	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1482692_17	UniRef90	UniRef90_UPI001D10F2EF	helix-turn-helix domain-containing protein	NA
UHGV-1482692_17	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1482692_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1482692_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1482692_18	UniRef90	UniRef90_UPI001F4593E3	helix-turn-helix domain-containing protein	NA
UHGV-1482692_18	eggNOG-mapper	521095.Apar_1223	addiction module antidote protein HigA	NA
UHGV-1482692_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1482692_18	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1482692_19	KOfam	K14059	int; integrase	NA
UHGV-1482692_19	PHROG	phrog_1	integrase	integration and excision
UHGV-1482692_19	UniRef90	UniRef90_UPI001F415E86	tyrosine-type recombinase/integrase	NA
UHGV-1482692_19	eggNOG-mapper	457415.HMPREF1006_01800	DNA integration	NA
UHGV-1482692_19	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1482692_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1482692_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1482692_19	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA