UHGV-1483277

Genome information

vOTU vOTU-020707

Genome length 16,642 bps

CDS count 22

Completeness 74.43% (medium-quality)

geNomad score 0.9666

Prediction confidence Confident

Genome information
Genome ID	UHGV-1483277
vOTU ID	vOTU-020707
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0112955
BioSample	SAMN00715141
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9666
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.01
Jumbo phage	No

Genome content
Genome length	16,642 bps
GC content	38.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	92.60%
Average CDS length	704.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1483277_7	PHROG	phrog_2150	terminase	head and packaging
UHGV-1483277_7	UniRef90	UniRef90_UPI0009B42C61	phage DNA encapsidation protein	NA
UHGV-1483277_7	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1483277_7	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1483277_7	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1483277_8	KOfam	K07273	acm; lysozyme	NA
UHGV-1483277_8	PHROG	phrog_291	endolysin	lysis
UHGV-1483277_8	UniRef90	UniRef90_UPI0011C9D1E8	glycoside hydrolase family 25 protein	NA
UHGV-1483277_8	eggNOG-mapper	1211819.CALK01000009_gene2765	Glycosyl hydrolases family 25	NA
UHGV-1483277_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1483277_8	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1483277_8	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1483277_9	PHROG	phrog_199	holin	lysis
UHGV-1483277_9	UniRef90	UniRef90_UPI001C0AEEFF	phage holin family protein	NA
UHGV-1483277_9	eggNOG-mapper	86416.Clopa_3360	toxin secretion phage lysis holin	NA
UHGV-1483277_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1483277_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1483277_9	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1483277_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1483277_12	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1483277_12	Structural annotation	PF10368	NA	NA
UHGV-1483277_13	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1483277_13	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-1483277_13	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-1483277_14	PHROG	phrog_2038	upper collar connector	connector
UHGV-1483277_14	eggNOG-mapper	1128071.G9J3I3_9CAUD	Phage Connector (GP10)	NA
UHGV-1483277_14	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1483277_14	Structural annotation	PF05352, MF_04135, TIGR01538, COG4695	NA	NA
UHGV-1483277_15	PHROG	phrog_2248	tail protein	tail
UHGV-1483277_15	UniRef90	UniRef90_A0A843GL83	Caud_tail_N domain-containing protein	NA
UHGV-1483277_15	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-1483277_15	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1483277_15	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1483277_15	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1483277_16	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1483277_16	UniRef90	UniRef90_A0A7M1RR81	Major head protein	NA
UHGV-1483277_16	eggNOG-mapper	1309583.M4W8D1_9CAUD	viral capsid	NA
UHGV-1483277_16	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1483277_19	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1483277_19	UniRef90	UniRef90_J9GJ47	SsDNA binding protein (Fragment)	NA
UHGV-1483277_19	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-1483277_19	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-1483277_19	Structural annotation	PF17427	NA	NA
UHGV-1483277_20	PHROG	phrog_6358	DNA terminal protein	DNA, RNA and nucleotide metabolism
UHGV-1483277_20	Pfam	PF05435	Phi-29 DNA terminal protein GP3	Phi-29_GP3
UHGV-1483277_20	Structural annotation	PF05435	NA	NA
UHGV-1483277_21	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1483277_21	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1483277_21	UniRef90	UniRef90_A0A8D6UFH5	DNA-directed DNA polymerase	NA
UHGV-1483277_21	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-1483277_21	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1483277_21	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA