UHGV-1484714

Genome information

Genome length 26,634 bps

CDS count 33

Completeness 66.47% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-1484714
vOTU ID	vOTU-035819
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0192314
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.14
Jumbo phage	No

Genome content
Genome length	26,634 bps
GC content	31.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	91.69%
Average CDS length	741.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1484714_3	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1484714_3	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-1484714_3	eggNOG-mapper	1415774.U728_1667	NA	NA
UHGV-1484714_3	Pfam	PF14359	NA	DUF4406
UHGV-1484714_3	Structural annotation	PF14359	NA	NA
UHGV-1484714_4	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1484714_4	UniRef90	UniRef90_UPI000360E95E	phage scaffolding protein	NA
UHGV-1484714_4	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-1484714_4	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1484714_5	PHROG	phrog_544	major head protein	head and packaging
UHGV-1484714_5	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-1484714_5	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-1484714_5	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1484714_5	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1484714_6	PHROG	phrog_4020	NA	unknown function
UHGV-1484714_6	eggNOG-mapper	1121342.AUCO01000012_gene1692	NA	NA
UHGV-1484714_7	PHROG	phrog_8435	NA	unknown function
UHGV-1484714_7	eggNOG-mapper	536233.CLO_0543	NA	NA
UHGV-1484714_7	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1484714_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1484714_8	UniRef90	UniRef90_A0A2H4J736	Putative tail component protein	NA
UHGV-1484714_8	eggNOG-mapper	559189.B6SBT4_9CAUD	NA	NA
UHGV-1484714_8	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1484714_9	PHROG	phrog_7585	NA	unknown function
UHGV-1484714_9	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1484714_10	PHROG	phrog_6686	tail tube protein	tail
UHGV-1484714_10	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-1484714_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1484714_11	PHROG	phrog_6280	NA	unknown function
UHGV-1484714_11	UniRef90	UniRef90_A0A446I9J5	Esterase	NA
UHGV-1484714_11	eggNOG-mapper	1443125.Z962_12410	NA	NA
UHGV-1484714_12	PHROG	phrog_6541	NA	unknown function
UHGV-1484714_12	eggNOG-mapper	1196322.A370_04057	NA	NA
UHGV-1484714_13	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1484714_13	UniRef90	UniRef90_A0A6G4CRY0	Phage tail tape measure protein	NA
UHGV-1484714_13	eggNOG-mapper	1476973.JMMB01000007_gene1771	Phage-related minor tail protein	NA
UHGV-1484714_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1484714_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1484714_13	COG	COG5283	Phage-related tail protein	NA
UHGV-1484714_13	Structural annotation	PF10145, MF_04138, TIGR01760	NA	NA
UHGV-1484714_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1484714_14	UniRef90	UniRef90_A0A1C5YVW7	Phage-related protein	NA
UHGV-1484714_14	eggNOG-mapper	1032362.F6K8S1_9CAUD	Phage tail protein	NA
UHGV-1484714_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1484714_15	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-1484714_15	PHROG	phrog_13289	tail protein	tail
UHGV-1484714_15	UniRef90	UniRef90_UPI0018AA7BAA	SH3 domain-containing protein	NA
UHGV-1484714_15	eggNOG-mapper	1151292.QEW_4523	Phage minor structural protein	NA
UHGV-1484714_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1484714_15	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1484714_15	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1484714_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1484714_15	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1484714_15	Structural annotation	PF14594, PF08239, PF19081, PF13229, TIGR01665, NF040678, COG4926, COG4991, COG0791	NA	NA
UHGV-1484714_16	PHROG	phrog_5240	tail fiber protein	tail
UHGV-1484714_16	UniRef90	UniRef90_S6FAM0	Putative GDSL-like protein	NA
UHGV-1484714_16	eggNOG-mapper	877415.JNJQ01000011_gene667	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-1484714_16	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1484714_16	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1484714_17	UniRef90	UniRef90_A0A542AKB6	Anaerobic ribonucleoside-triphosphate reductase-like protein	NA
UHGV-1484714_17	eggNOG-mapper	1105031.HMPREF1141_0490	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1484714_17	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-1484714_17	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1484714_18	PHROG	phrog_1863	NA	unknown function
UHGV-1484714_18	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-1484714_18	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-1484714_19	PHROG	phrog_1129	holin	lysis
UHGV-1484714_19	UniRef90	UniRef90_A0A0B3VH17	Holin	NA
UHGV-1484714_19	eggNOG-mapper	702450.CUW_2556	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1484714_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1484714_19	Structural annotation	PF06946	NA	NA
UHGV-1484714_20	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1484714_20	PHROG	phrog_435	endolysin	lysis
UHGV-1484714_20	UniRef90	UniRef90_UPI0018A97EC2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1484714_20	eggNOG-mapper	445973.CLOBAR_01731	Ami_3	NA
UHGV-1484714_20	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1484714_20	Pfam	PF19087	NA	DUF5776
UHGV-1484714_20	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1484714_20	Structural annotation	PF01520, PF19087, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1484714_21	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1484714_21	PHROG	phrog_95	integrase	integration and excision
UHGV-1484714_21	UniRef90	UniRef90_UPI0018AAC734	recombinase family protein	NA
UHGV-1484714_21	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-1484714_21	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1484714_21	Pfam	PF07508	Recombinase	Recombinase
UHGV-1484714_21	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1484714_21	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1484714_22	PHROG	phrog_28892	NA	unknown function
UHGV-1484714_22	UniRef90	UniRef90_B1V2Q3	Putative lipoprotein	NA
UHGV-1484714_22	eggNOG-mapper	1211817.CCAT010000008_gene969	NA	NA
UHGV-1484714_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1484714_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1484714_24	UniRef90	UniRef90_UPI001A9A9916	helix-turn-helix transcriptional regulator	NA
UHGV-1484714_24	eggNOG-mapper	1033737.CAEV01000076_gene557	Helix-turn-helix XRE-family like proteins	NA
UHGV-1484714_24	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1484714_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1484714_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1484714_25	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1484714_25	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1484714_25	UniRef90	UniRef90_UPI0011064915	helix-turn-helix domain-containing protein	NA
UHGV-1484714_25	eggNOG-mapper	1449126.JQKL01000003_gene1714	Helix-turn-helix XRE-family like proteins	NA
UHGV-1484714_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1484714_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1484714_25	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1484714_26	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1484714_26	UniRef90	UniRef90_UPI0018A8FFA9	Rha family transcriptional regulator	NA
UHGV-1484714_26	eggNOG-mapper	1391647.AVSV01000022_gene2516	ORF6C domain	NA
UHGV-1484714_26	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1484714_26	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1484714_26	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1484714_26	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1484714_26	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-1484714_28	Structural annotation	PF10922, NF007780	NA	NA
UHGV-1484714_31	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1484714_31	UniRef90	UniRef90_W1XZM1	Homing nuclease	NA
UHGV-1484714_31	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-1484714_31	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1484714_31	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1484714_31	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1484714_31	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-1484714_31	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1484714_32	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1484714_32	UniRef90	UniRef90_UPI0018A93168	ERF family protein	NA
UHGV-1484714_32	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-1484714_32	Pfam	PF04404	ERF superfamily	ERF
UHGV-1484714_32	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-1484714_33	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1484714_33	UniRef90	UniRef90_UPI00068AA660	helix-turn-helix domain-containing protein	NA
UHGV-1484714_33	eggNOG-mapper	1408823.AXUS01000025_gene2662	DNA-binding transcription factor activity	NA
UHGV-1484714_33	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1484714_33	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-1484714_33	Structural annotation	PF13730, MF_01909, NF040939, COG1846	NA	NA