UHGV-1485478

Genome information

Genome length 39,140 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9700

Prediction confidence Confident

Genome information
Genome ID	UHGV-1485478
vOTU ID	vOTU-009926
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0263917
BioSample	SAMEA2738050
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9700
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.07
Jumbo phage	No

Genome content
Genome length	39,140 bps
GC content	66.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.12%
Average CDS length	597.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1485478_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1485478_1	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1485478_1	UniRef90	UniRef90_X6PXX2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1485478_1	eggNOG-mapper	1125718.HMPREF1318_0889	C-5 cytosine-specific DNA methylase	NA
UHGV-1485478_1	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1485478_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1485478_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1485478_1	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1485478_3	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1485478_3	UniRef90	UniRef90_A0A7K0K087	Recombinase RecT	NA
UHGV-1485478_3	eggNOG-mapper	525268.HMPREF0308_2040	NA	NA
UHGV-1485478_3	Structural annotation	NF007351, COG3723	NA	NA
UHGV-1485478_6	Structural annotation	PF19607, COG2076	NA	NA
UHGV-1485478_7	Structural annotation	PF14282	NA	NA
UHGV-1485478_8	eggNOG-mapper	1120944.JONS01000002_gene1705	NA	NA
UHGV-1485478_8	Structural annotation	PF16397, NF033845	NA	NA
UHGV-1485478_12	UniRef90	UniRef90_UPI001552FEB1	helix-turn-helix domain-containing protein	NA
UHGV-1485478_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1485478_12	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1485478_12	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-1485478_13	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-1485478_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1485478_14	KOfam	K14059	int; integrase	NA
UHGV-1485478_14	PHROG	phrog_1	integrase	integration and excision
UHGV-1485478_14	UniRef90	UniRef90_UPI0006918C50	site-specific integrase	NA
UHGV-1485478_14	eggNOG-mapper	1284679.HMPREF1626_08665	Belongs to the 'phage' integrase family	NA
UHGV-1485478_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1485478_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1485478_14	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1485478_16	UniRef90	UniRef90_J0NW70	DNA-binding helix-turn-helix protein	NA
UHGV-1485478_16	eggNOG-mapper	1125718.HMPREF1318_2351	Helix-turn-helix XRE-family like proteins	NA
UHGV-1485478_16	Structural annotation	PF14590, TIGR03070, COG2944	NA	NA
UHGV-1485478_17	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1485478_17	UniRef90	UniRef90_UPI000C2C6505	transcriptional regulator	NA
UHGV-1485478_17	eggNOG-mapper	106370.Francci3_4095	NA	NA
UHGV-1485478_17	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-1485478_19	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-1485478_19	PHROG	phrog_17803	phosphodiesterase	other
UHGV-1485478_19	UniRef90	UniRef90_UPI000660BBAC	glycerophosphodiester phosphodiesterase	NA
UHGV-1485478_19	eggNOG-mapper	888052.HMPREF9006_0953	glycerophosphoryl diester phosphodiesterase	NA
UHGV-1485478_19	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-1485478_19	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-1485478_19	Structural annotation	PF03009, MF_02227, NF006989, COG0584	NA	NA
UHGV-1485478_20	PHROG	phrog_30808	NA	unknown function
UHGV-1485478_20	UniRef90	UniRef90_A0A7U0HMP2	Collagen-like protein	NA
UHGV-1485478_20	Structural annotation	PF10794	NA	NA
UHGV-1485478_21	PHROG	phrog_15808	NA	unknown function
UHGV-1485478_21	UniRef90	UniRef90_Z4X4B6	PF10874 family protein	NA
UHGV-1485478_22	eggNOG-mapper	525246.HMPREF0058_1258	NA	NA
UHGV-1485478_23	PHROG	phrog_21825	endolysin	lysis
UHGV-1485478_23	UniRef90	UniRef90_A0A0V8RPY9	Peptidase C51 domain-containing protein	NA
UHGV-1485478_23	eggNOG-mapper	883077.HMPREF9241_01712	CHAP domain	NA
UHGV-1485478_23	Pfam	PF05257	CHAP domain	CHAP
UHGV-1485478_23	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1485478_23	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-1485478_25	Structural annotation	PF15868, NF012201	NA	NA
UHGV-1485478_26	Structural annotation	PF20328, PF18573, NF033147	NA	NA
UHGV-1485478_27	PHROG	phrog_1887	tail protein	tail
UHGV-1485478_27	eggNOG-mapper	888439.HMPREF9240_01841	NA	NA
UHGV-1485478_27	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1485478_28	PHROG	phrog_30446	NA	unknown function
UHGV-1485478_28	Structural annotation	PF05939, TIGR01633, COG5437	NA	NA
UHGV-1485478_29	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1485478_29	UniRef90	UniRef90_A0A4Q5MYB3	Phage tail tape measure protein	NA
UHGV-1485478_29	eggNOG-mapper	1349820.M707_02760	Phage tail tape measure protein, TP901 family	NA
UHGV-1485478_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1485478_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1485478_29	COG	COG5283	Phage-related tail protein	NA
UHGV-1485478_29	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1485478_32	PHROG	phrog_2491	major tail protein	tail
UHGV-1485478_32	eggNOG-mapper	888439.HMPREF9240_01932	NA	NA
UHGV-1485478_32	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1485478_34	Pfam	PF11367	NA	DUF3168
UHGV-1485478_34	Structural annotation	PF08873	NA	NA
UHGV-1485478_35	PHROG	phrog_19109	NA	unknown function
UHGV-1485478_35	eggNOG-mapper	888439.HMPREF9240_01929	NA	NA
UHGV-1485478_35	Structural annotation	TIGR01725	NA	NA
UHGV-1485478_36	PHROG	phrog_13779	NA	unknown function
UHGV-1485478_36	UniRef90	UniRef90_UPI0008993984	NA	NA
UHGV-1485478_36	Pfam	PF19586	NA	DUF6093
UHGV-1485478_36	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1485478_37	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1485478_37	UniRef90	UniRef90_UPI00142286FD	Gp19/Gp15/Gp42 family protein	NA
UHGV-1485478_37	eggNOG-mapper	888439.HMPREF9240_01927	NA	NA
UHGV-1485478_37	Structural annotation	PF09355	NA	NA
UHGV-1485478_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-1485478_39	UniRef90	UniRef90_A0A2I1IQI8	Phage major capsid protein	NA
UHGV-1485478_39	eggNOG-mapper	888439.HMPREF9240_01925	Phage capsid family	NA
UHGV-1485478_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1485478_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1485478_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1485478_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1485478_40	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-1485478_40	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-1485478_41	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1485478_41	UniRef90	UniRef90_A0A3G2KI71	MuF-like minor capsid protein	NA
UHGV-1485478_41	eggNOG-mapper	888439.HMPREF9240_01922	NA	NA
UHGV-1485478_42	PHROG	phrog_104	portal protein	head and packaging
UHGV-1485478_42	UniRef90	UniRef90_A0A2I1IQJ9	Phage portal protein	NA
UHGV-1485478_42	eggNOG-mapper	888439.HMPREF9240_01921	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1485478_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1485478_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1485478_43	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-1485478_43	UniRef90	UniRef90_A0A2A9CUG4	Phage terminase large subunit-like protein	NA
UHGV-1485478_43	eggNOG-mapper	1095772.CAHH01000052_gene248	Terminase	NA
UHGV-1485478_43	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1485478_43	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1485478_44	PHROG	phrog_226	minor tail protein	tail
UHGV-1485478_44	UniRef90	UniRef90_A0A3G3M4U7	Terminase small subunit	NA
UHGV-1485478_44	eggNOG-mapper	247156.NFA_15210	NA	NA
UHGV-1485478_45	Structural annotation	PF13384, MF_01214	NA	NA
UHGV-1485478_47	PHROG	phrog_5429	DNA repair protein	DNA, RNA and nucleotide metabolism
UHGV-1485478_47	UniRef90	UniRef90_A0A7K3LUZ5	MmcB family DNA repair protein	NA
UHGV-1485478_47	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-1485478_48	eggNOG-mapper	1120944.JONS01000016_gene1220	NA	NA
UHGV-1485478_48	Structural annotation	NF033787	NA	NA
UHGV-1485478_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1485478_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1485478_49	UniRef90	UniRef90_UPI00031643B4	single-stranded DNA-binding protein	NA
UHGV-1485478_49	eggNOG-mapper	521393.JH806633_gene1261	Single-strand binding protein family	NA
UHGV-1485478_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1485478_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1485478_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1485478_49	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1485478_50	PHROG	phrog_6055	NA	unknown function
UHGV-1485478_50	eggNOG-mapper	883077.HMPREF9241_01685	NA	NA
UHGV-1485478_51	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1485478_51	eggNOG-mapper	395019.Bmul_3853	NA	NA
UHGV-1485478_51	COG	COG3756	NA	NA
UHGV-1485478_51	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1485478_52	Structural annotation	PF10879, NF001670, COG2092	NA	NA
UHGV-1485478_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1485478_56	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1485478_56	UniRef90	UniRef90_A0A7Z9CAI5	Endodeoxyribonuclease RusA	NA
UHGV-1485478_56	eggNOG-mapper	935866.JAER01000006_gene3384	NA	NA
UHGV-1485478_56	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1485478_57	UniRef90	UniRef90_UPI00109DD9F1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1485478_57	eggNOG-mapper	521393.JH806633_gene1246	C-5 cytosine-specific DNA methylase	NA
UHGV-1485478_57	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1485478_57	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1485478_57	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1485478_60	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-1485478_60	UniRef90	UniRef90_A0A1I4AAS8	DNA (Cytosine-5)-methyltransferase 1	NA
UHGV-1485478_60	eggNOG-mapper	1054860.KB913030_gene3091	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1485478_60	COG	COG0270	DNA-cytosine methylase	NA