UHGV-1485613

Genome information

Genome length 39,204 bps

CDS count 54

Completeness 95.98% (high-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-1485613
vOTU ID	vOTU-012776
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0264272
BioSample	SAMEA4545424
Country	Kazakhstan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.68
Jumbo phage	No

Genome content
Genome length	39,204 bps
GC content	34.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	87.12%
Average CDS length	634.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1485613_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1485613_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1485613_1	UniRef90	UniRef90_J7W249	HNHc domain-containing protein	NA
UHGV-1485613_1	eggNOG-mapper	315730.BcerKBAB4_3594	HNH endonuclease	NA
UHGV-1485613_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1485613_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1485613_2	eggNOG-mapper	1139219.I569_00227	NA	NA
UHGV-1485613_3	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1485613_3	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1485613_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1485613_4	UniRef90	UniRef90_W7LAN8	Putative phage terminase, large subunit	NA
UHGV-1485613_4	eggNOG-mapper	1307436.PBF_22058	Terminase	NA
UHGV-1485613_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1485613_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1485613_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1485613_4	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1485613_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-1485613_5	UniRef90	UniRef90_UPI0011B5ADC1	phage portal protein	NA
UHGV-1485613_5	eggNOG-mapper	1158607.UAU_01030	Phage portal protein	NA
UHGV-1485613_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1485613_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1485613_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1485613_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1485613_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1485613_6	UniRef90	UniRef90_A0A7V6Y6F7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1485613_6	eggNOG-mapper	1450694.BTS2_0542	Serine dehydrogenase proteinase	NA
UHGV-1485613_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1485613_6	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1485613_6	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1485613_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-1485613_7	UniRef90	UniRef90_UPI001A8F5724	phage major capsid protein	NA
UHGV-1485613_7	eggNOG-mapper	565664.EFXG_01776	Phage capsid family	NA
UHGV-1485613_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1485613_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1485613_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1485613_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1485613_8	PHROG	phrog_341	major tail protein	tail
UHGV-1485613_8	UniRef90	UniRef90_A0A0M3ULD2	Major tail protein	NA
UHGV-1485613_8	Structural annotation	PF16967	NA	NA
UHGV-1485613_9	PHROG	phrog_749	NA	unknown function
UHGV-1485613_9	eggNOG-mapper	768486.EHR_09585	NA	NA
UHGV-1485613_10	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-1485613_11	PHROG	phrog_5910	NA	unknown function
UHGV-1485613_12	PHROG	phrog_5509	neck protein	connector
UHGV-1485613_12	eggNOG-mapper	1158607.UAU_01036	NA	NA
UHGV-1485613_12	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1485613_13	UniRef90	UniRef90_UPI0010F78F52	phage tail protein	NA
UHGV-1485613_13	eggNOG-mapper	768486.EHR_09605	NA	NA
UHGV-1485613_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1485613_14	PHROG	phrog_5802	NA	unknown function
UHGV-1485613_14	eggNOG-mapper	565664.EFXG_01769	NA	NA
UHGV-1485613_15	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1485613_15	eggNOG-mapper	673839.D2J070_9CAUD	peptidoglycan catabolic process	NA
UHGV-1485613_15	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1485613_15	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1485613_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1485613_16	UniRef90	UniRef90_I6SDW0	Gp13 protein	NA
UHGV-1485613_16	eggNOG-mapper	565664.EFXG_01766	phage tail	NA
UHGV-1485613_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1485613_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-1485613_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1485613_17	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1485613_17	UniRef90	UniRef90_A0A1L8WAB1	Phage minor structural protein	NA
UHGV-1485613_17	eggNOG-mapper	768486.EHR_09630	Prophage endopeptidase tail	NA
UHGV-1485613_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1485613_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1485613_17	COG	COG4926	Phage-related protein	NA
UHGV-1485613_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1485613_18	PHROG	phrog_9884	NA	unknown function
UHGV-1485613_18	eggNOG-mapper	565664.EFXG_01764	NA	NA
UHGV-1485613_19	PHROG	phrog_4105	NA	unknown function
UHGV-1485613_19	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-1485613_20	PHROG	phrog_962	holin	lysis
UHGV-1485613_20	UniRef90	UniRef90_A0A367GJ74	Phage holin	NA
UHGV-1485613_20	eggNOG-mapper	411465.PEPMIC_00750	Bacteriophage holin	NA
UHGV-1485613_20	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1485613_20	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1485613_20	COG	COG5546	NA	NA
UHGV-1485613_20	Structural annotation	COG5546	NA	NA
UHGV-1485613_21	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1485613_21	PHROG	phrog_3393	endolysin	lysis
UHGV-1485613_21	UniRef90	UniRef90_A0A4V3RGV3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1485613_21	eggNOG-mapper	768486.EHR_09885	Ami_2	NA
UHGV-1485613_21	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1485613_21	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1485613_21	Structural annotation	PF01835, COG5632	NA	NA
UHGV-1485613_22	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-1485613_22	PHROG	phrog_22	thioredoxin domain	DNA, RNA and nucleotide metabolism
UHGV-1485613_22	UniRef90	UniRef90_A0A1T4KMG4	Glutaredoxin-like protein NrdH	NA
UHGV-1485613_22	eggNOG-mapper	1104325.M7W_2399	Glutaredoxin	NA
UHGV-1485613_22	Pfam	PF00462	Glutaredoxin	Glutaredoxin
UHGV-1485613_22	COG	COG0695	Glutaredoxin	NA
UHGV-1485613_22	Structural annotation	PF00462, MF_01132, NF007657, COG0695	NA	NA
UHGV-1485613_23	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1485613_23	UniRef90	UniRef90_A0A5S9MN76	DNA polymerase	NA
UHGV-1485613_23	eggNOG-mapper	1445858.A0A060ANI6_9CAUD	nucleic acid binding	NA
UHGV-1485613_23	Structural annotation	PF00136, PF05037, MF_04100, NF004420, COG0417	NA	NA
UHGV-1485613_24	PHROG	phrog_6479	NA	unknown function
UHGV-1485613_24	Structural annotation	PF05037, PF17847, TIGR00638	NA	NA
UHGV-1485613_25	PHROG	phrog_674	NA	unknown function
UHGV-1485613_25	UniRef90	UniRef90_V5URF5	NA	NA
UHGV-1485613_25	eggNOG-mapper	1445858.A0A060AHG8_9CAUD	NA	NA
UHGV-1485613_25	Pfam	PF07083	NA	DUF1351
UHGV-1485613_25	Structural annotation	PF07083	NA	NA
UHGV-1485613_26	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1485613_26	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1485613_26	UniRef90	UniRef90_A0A2R3ZDN3	Metal dependent hydrolase	NA
UHGV-1485613_26	eggNOG-mapper	1416012.V5UQV5_9CAUD	hydrolase activity	NA
UHGV-1485613_26	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1485613_26	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1485613_28	PHROG	phrog_4943	NA	unknown function
UHGV-1485613_28	eggNOG-mapper	1161939.A0A067XH04_9CAUD	NA	NA
UHGV-1485613_28	Pfam	PF11753	NA	DUF3310
UHGV-1485613_28	Structural annotation	PF20111, MF_00754	NA	NA
UHGV-1485613_30	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1485613_30	UniRef90	UniRef90_A0A249XUN1	Bifunctional DNA primase/polymerase	NA
UHGV-1485613_30	eggNOG-mapper	888064.HMPREF9088_0813	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-1485613_30	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-1485613_30	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-1485613_30	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1485613_30	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-1485613_44	PHROG	phrog_24086	NA	unknown function
UHGV-1485613_45	PHROG	phrog_28226	NA	unknown function
UHGV-1485613_45	Structural annotation	PF17574	NA	NA
UHGV-1485613_50	PHROG	phrog_25936	NA	unknown function
UHGV-1485613_51	PHROG	phrog_4188	NA	unknown function
UHGV-1485613_52	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1485613_52	UniRef90	UniRef90_A0A0M4RE09	DNA primase	NA
UHGV-1485613_52	eggNOG-mapper	543734.LCABL_30880	Phage plasmid primase, P4	NA
UHGV-1485613_52	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1485613_52	Pfam	PF19263	NA	DUF5906
UHGV-1485613_52	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1485613_52	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1485613_52	Structural annotation	PF05272, PF08706, PF02257, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-1485613_53	UniRef90	UniRef90_A0A411B6Q1	Endonuclease	NA
UHGV-1485613_53	eggNOG-mapper	1126885.I3VYX6_9CAUD	hydrolase activity, acting on ester bonds	NA
UHGV-1485613_53	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-1485613_54	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1485613_54	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1485613_54	UniRef90	UniRef90_A0A0M3UL51	Helicase	NA
UHGV-1485613_54	eggNOG-mapper	1432658.V5UR18_9CAUD	helicase activity	NA
UHGV-1485613_54	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1485613_54	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1485613_54	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA