UHGV-1485840

Genome information

Genome length 27,797 bps

CDS count 38

Completeness 52.58% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-1485840
vOTU ID	vOTU-035835
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0199009
BioSample	SAMEA2738113
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.06
Jumbo phage	No

Genome content
Genome length	27,797 bps
GC content	33.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	94.82%
Average CDS length	695.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1485840_3	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1485840_3	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1485840_3	UniRef90	UniRef90_G3MAX4	Gp594	NA
UHGV-1485840_3	eggNOG-mapper	1084719.G3MAX4_9CAUD	Type III restriction enzyme, res subunit	NA
UHGV-1485840_3	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1485840_3	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1485840_3	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1485840_3	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-1485840_6	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1485840_6	PHROG	phrog_291	endolysin	lysis
UHGV-1485840_6	UniRef90	UniRef90_UPI000406D7AC	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1485840_6	eggNOG-mapper	1123263.AUKY01000046_gene483	Glycosyl hydrolases family 25	NA
UHGV-1485840_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1485840_6	Pfam	PF01476	LysM domain	LysM
UHGV-1485840_6	NCBIFam	TIGR02899.1	SafA/ExsA family spore coat assembly protein	NA
UHGV-1485840_6	COG	COG1388	LysM repeat	NA
UHGV-1485840_6	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-1485840_7	PHROG	phrog_20258	NA	unknown function
UHGV-1485840_7	eggNOG-mapper	929506.CbC4_0850	NA	NA
UHGV-1485840_8	COG	COG2203	GAF domain	NA
UHGV-1485840_8	Structural annotation	PF01590, MF_04104, NF041673, COG2203	NA	NA
UHGV-1485840_10	PHROG	phrog_7037	tail fiber protein	tail
UHGV-1485840_10	UniRef90	UniRef90_UPI00126A7920	phage tail protein	NA
UHGV-1485840_10	eggNOG-mapper	742742.HMPREF9452_00378	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1485840_10	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1485840_10	Structural annotation	PF12571	NA	NA
UHGV-1485840_11	PHROG	phrog_521	tail protein	tail
UHGV-1485840_11	UniRef90	UniRef90_UPI001C0FA1E1	NA	NA
UHGV-1485840_11	eggNOG-mapper	1195236.CTER_3988	NA	NA
UHGV-1485840_11	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1485840_11	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1485840_11	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1485840_12	PHROG	phrog_6	baseplate protein	tail
UHGV-1485840_12	UniRef90	UniRef90_UPI0006B4BF53	baseplate J/gp47 family protein	NA
UHGV-1485840_12	eggNOG-mapper	642492.Clole_2741	baseplate J-like protein	NA
UHGV-1485840_12	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1485840_12	COG	COG3299	NA	NA
UHGV-1485840_12	Structural annotation	PF04865, PF21379, MF_04102, COG3299	NA	NA
UHGV-1485840_13	PHROG	phrog_120	baseplate protein	tail
UHGV-1485840_13	UniRef90	UniRef90_UPI001E53D8AC	NA	NA
UHGV-1485840_13	eggNOG-mapper	1567014.A0A0A7RTU4_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1485840_13	Pfam	PF10934	NA	DUF2634
UHGV-1485840_13	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1485840_15	PHROG	phrog_24267	NA	unknown function
UHGV-1485840_15	UniRef90	UniRef90_A0A5P8D3J3	Tail fiber protein	NA
UHGV-1485840_15	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-1485840_15	Pfam	PF10844	NA	DUF2577
UHGV-1485840_15	COG	COG4675	Phage tail collar domain	NA
UHGV-1485840_16	PHROG	phrog_400	tail protein	tail
UHGV-1485840_16	UniRef90	UniRef90_I4A6E7	Phage late control gene D protein (GPD)	NA
UHGV-1485840_16	eggNOG-mapper	756499.Desde_1099	PFAM Phage late control gene D protein (GPD)	NA
UHGV-1485840_16	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1485840_16	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1485840_17	PHROG	phrog_380	endolysin	lysis
UHGV-1485840_17	UniRef90	UniRef90_A0A369AYK2	LysM domain-containing protein	NA
UHGV-1485840_17	eggNOG-mapper	665950.HMPREF1025_01343	LysM domain	NA
UHGV-1485840_17	Pfam	PF01476	LysM domain	LysM
UHGV-1485840_17	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1485840_17	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-1485840_18	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1485840_18	UniRef90	UniRef90_A0A135L125	TMP_3 domain-containing protein	NA
UHGV-1485840_18	eggNOG-mapper	552396.HMPREF0863_00318	tape measure	NA
UHGV-1485840_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1485840_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1485840_18	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1485840_18	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-1485840_19	PHROG	phrog_20560	NA	unknown function
UHGV-1485840_20	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1485840_20	UniRef90	UniRef90_UPI001EE00C0E	XkdN-like protein	NA
UHGV-1485840_20	eggNOG-mapper	1122919.KB905569_gene2950	Phage portal protein	NA
UHGV-1485840_20	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1485840_20	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1485840_21	PHROG	phrog_365	tail protein	tail
UHGV-1485840_21	UniRef90	UniRef90_M1ZTZ5	Phage-like element PBSX protein xkdM	NA
UHGV-1485840_21	eggNOG-mapper	445335.CBN_2979	Phage tail tube protein	NA
UHGV-1485840_21	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1485840_21	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1485840_22	PHROG	phrog_279	tail sheath	tail
UHGV-1485840_22	UniRef90	UniRef90_A0A7X3DAS5	Phage tail sheath protein	NA
UHGV-1485840_22	eggNOG-mapper	398512.JQKC01000053_gene2533	Phage tail sheath C-terminal domain	NA
UHGV-1485840_22	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1485840_22	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1485840_22	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1485840_22	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1485840_23	PHROG	phrog_525	NA	unknown function
UHGV-1485840_23	Pfam	PF20765	NA	DUF6838
UHGV-1485840_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1485840_24	UniRef90	UniRef90_UPI0018837D80	HK97 gp10 family phage protein	NA
UHGV-1485840_24	eggNOG-mapper	862517.HMPREF9225_1644	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1485840_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1485840_24	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1485840_25	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1485840_25	eggNOG-mapper	1095750.HMPREF9970_0284	NA	NA
UHGV-1485840_25	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1485840_26	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1485840_28	PHROG	phrog_29	major head protein	head and packaging
UHGV-1485840_28	UniRef90	UniRef90_A0A0F5HMN1	Phage major capsid protein	NA
UHGV-1485840_28	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-1485840_28	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1485840_28	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1485840_29	PHROG	phrog_909	major head protein	head and packaging
UHGV-1485840_29	UniRef90	UniRef90_A0A098MDH2	NA	NA
UHGV-1485840_29	eggNOG-mapper	1347368.HG964404_gene4994	NA	NA
UHGV-1485840_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1485840_30	UniRef90	UniRef90_UPI00088D90B8	phage scaffolding protein	NA
UHGV-1485840_30	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-1485840_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1485840_30	Structural annotation	PF06810	NA	NA
UHGV-1485840_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1485840_31	UniRef90	UniRef90_A0A2S6NZ97	Phage head morphogenesis protein	NA
UHGV-1485840_31	eggNOG-mapper	398512.JQKC01000053_gene2522	Phage Mu protein F like protein	NA
UHGV-1485840_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1485840_31	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1485840_31	COG	COG2369	NA	NA
UHGV-1485840_31	Structural annotation	PF03496, PF04233, MF_04142, NF041404, TIGR01641, COG2369	NA	NA
UHGV-1485840_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-1485840_32	UniRef90	UniRef90_A0A101H944	Phage portal protein, SPP1 family	NA
UHGV-1485840_32	eggNOG-mapper	445335.CBN_1374	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1485840_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1485840_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1485840_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1485840_34	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1485840_34	UniRef90	UniRef90_A0A316M6C2	PBSX family phage terminase large subunit	NA
UHGV-1485840_34	eggNOG-mapper	268407.PWYN_15645	Terminase RNAseH like domain	NA
UHGV-1485840_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1485840_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1485840_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-1485840_37	eggNOG-mapper	1118055.CAGU01000013_gene784	NA	NA