UHGV-1485906

Genome information

vOTU vOTU-071911

Genome length 36,652 bps

CDS count 58

Completeness 90.12% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-1485906
vOTU ID	vOTU-071911
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0249426
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.12% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.99
Jumbo phage	No

Genome content
Genome length	36,652 bps
GC content	52.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.21%
Average CDS length	576.00 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1485906_3	PHROG	phrog_21718	NA	unknown function
UHGV-1485906_5	PHROG	phrog_16490	NA	unknown function
UHGV-1485906_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1485906_6	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-1485906_7	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1485906_8	KOfam	K14059	int; integrase	NA
UHGV-1485906_8	PHROG	phrog_1	integrase	integration and excision
UHGV-1485906_8	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-1485906_8	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-1485906_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1485906_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1485906_8	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1485906_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1485906_9	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-1485906_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1485906_9	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1485906_12	eggNOG-mapper	2754.EH55_07110	NA	NA
UHGV-1485906_12	Structural annotation	COG5342	NA	NA
UHGV-1485906_13	Structural annotation	PF06776, COG5342	NA	NA
UHGV-1485906_16	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-1485906_17	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-1485906_17	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-1485906_17	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1485906_18	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-1485906_24	Structural annotation	PF10346, MF_00337, NF010671	NA	NA
UHGV-1485906_27	PHROG	phrog_14970	NA	unknown function
UHGV-1485906_27	eggNOG-mapper	411469.EUBHAL_02677	double-strand break repair protein	NA
UHGV-1485906_27	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1485906_27	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1485906_28	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1485906_28	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-1485906_28	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1485906_30	PHROG	phrog_7566	NA	unknown function
UHGV-1485906_30	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-1485906_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1485906_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1485906_31	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-1485906_31	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1485906_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1485906_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1485906_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1485906_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1485906_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1485906_32	eggNOG-mapper	869209.Tresu_2711	DnaD domain protein	NA
UHGV-1485906_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1485906_32	Structural annotation	PF04182, MF_01819, TIGR04176, COG5625	NA	NA
UHGV-1485906_33	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1485906_33	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1485906_33	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-1485906_33	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-1485906_33	Pfam	PF13614	AAA domain	AAA_31
UHGV-1485906_33	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1485906_33	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1485906_34	UniRef90	UniRef90_A0A355JDC2	NA	NA
UHGV-1485906_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1485906_35	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1485906_35	UniRef90	UniRef90_A0A2A7AMC5	ParB domain-containing protein	NA
UHGV-1485906_35	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-1485906_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1485906_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1485906_35	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-1485906_36	Structural annotation	PF04545	NA	NA
UHGV-1485906_37	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1485906_37	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-1485906_37	UniRef90	UniRef90_A0A2V2GM11	Methyltransferase	NA
UHGV-1485906_37	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-1485906_37	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1485906_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1485906_37	COG	COG0863	DNA modification methylase	NA
UHGV-1485906_37	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1485906_38	PHROG	phrog_3136	NA	unknown function
UHGV-1485906_38	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-1485906_38	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1485906_38	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1485906_38	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1485906_40	PHROG	phrog_8680	NA	unknown function
UHGV-1485906_40	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-1485906_40	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1485906_40	Pfam	PF14386	NA	DUF4417
UHGV-1485906_40	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1485906_40	Structural annotation	PF14386	NA	NA
UHGV-1485906_42	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1485906_42	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-1485906_42	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-1485906_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1485906_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1485906_43	PHROG	phrog_13845	NA	unknown function
UHGV-1485906_43	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-1485906_43	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1485906_44	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1485906_44	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-1485906_44	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-1485906_44	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1485906_44	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1485906_44	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1485906_45	PHROG	phrog_12	portal protein	head and packaging
UHGV-1485906_45	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-1485906_45	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1485906_45	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1485906_45	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1485906_45	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1485906_45	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1485906_46	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1485906_46	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1485906_46	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-1485906_46	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1485906_46	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1485906_46	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1485906_46	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1485906_47	PHROG	phrog_10	major head protein	head and packaging
UHGV-1485906_47	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-1485906_47	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1485906_47	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1485906_47	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1485906_47	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1485906_47	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1485906_47	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1485906_48	PHROG	phrog_749	NA	unknown function
UHGV-1485906_48	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-1485906_49	PHROG	phrog_19734	NA	unknown function
UHGV-1485906_49	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-1485906_49	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-1485906_49	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1485906_50	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-1485906_50	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1485906_51	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1485906_51	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-1485906_51	eggNOG-mapper	33035.JPJF01000039_gene277	NA	NA
UHGV-1485906_51	Structural annotation	TIGR01725	NA	NA
UHGV-1485906_52	PHROG	phrog_88	major tail protein	tail
UHGV-1485906_52	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-1485906_52	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1485906_52	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1485906_52	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1485906_54	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-1485906_54	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-1485906_54	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-1485906_54	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1485906_54	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1485906_54	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1485906_54	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1485906_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1485906_55	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-1485906_55	eggNOG-mapper	1487921.DP68_11370	tail component	NA
UHGV-1485906_55	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1485906_55	COG	COG4722	Phage-related protein YomH	NA
UHGV-1485906_55	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1485906_56	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1485906_56	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-1485906_56	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1485906_56	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1485906_56	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1485906_56	COG	COG4926	Phage-related protein	NA
UHGV-1485906_56	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1485906_58	COG	COG0462	Phosphoribosylpyrophosphate synthetase	NA