UHGV-1486248

Genome information

vOTU vOTU-019144

Genome length 27,696 bps

CDS count 51

Completeness 63.19% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-1486248
vOTU ID	vOTU-019144
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0198419
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.37
Jumbo phage	No

Genome content
Genome length	27,696 bps
GC content	57.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.15%
Average CDS length	504.24 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1486248_1	PHROG	phrog_88	major tail protein	tail
UHGV-1486248_1	UniRef90	UniRef90_UPI001958259D	phage tail protein	NA
UHGV-1486248_1	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-1486248_1	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1486248_1	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1486248_2	PHROG	phrog_709	NA	unknown function
UHGV-1486248_2	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-1486248_2	Structural annotation	PF11836	NA	NA
UHGV-1486248_3	PHROG	phrog_3033	NA	unknown function
UHGV-1486248_3	eggNOG-mapper	1235799.C818_01010	NA	NA
UHGV-1486248_4	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1486248_4	UniRef90	UniRef90_S4H4X8	Phage tail tape measure protein, TP901 family	NA
UHGV-1486248_4	eggNOG-mapper	1121334.KB911068_gene2299	Phage tail tape measure protein, TP901 family	NA
UHGV-1486248_4	COG	COG5283	Phage-related tail protein	NA
UHGV-1486248_4	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1486248_5	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1486248_6	PHROG	phrog_6616	tail protein	tail
UHGV-1486248_6	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-1486248_6	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-1486248_7	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-1486248_7	Structural annotation	COG4379	NA	NA
UHGV-1486248_9	PHROG	phrog_3904	tail fiber protein	tail
UHGV-1486248_9	eggNOG-mapper	693979.Bache_2190	NA	NA
UHGV-1486248_9	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-1486248_10	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1486248_10	Structural annotation	PF21722	NA	NA
UHGV-1486248_11	eggNOG-mapper	1291050.JAGE01000001_gene436	NA	NA
UHGV-1486248_12	PHROG	phrog_18593	NA	unknown function
UHGV-1486248_12	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-1486248_12	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-1486248_12	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1486248_12	Structural annotation	PF14600	NA	NA
UHGV-1486248_13	PHROG	phrog_4105	NA	unknown function
UHGV-1486248_13	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1486248_13	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-1486248_14	PHROG	phrog_6918	holin	lysis
UHGV-1486248_14	UniRef90	UniRef90_G9YP36	Phage holin, LL-H family	NA
UHGV-1486248_14	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1486248_14	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1486248_15	KOfam	K07273	acm; lysozyme	NA
UHGV-1486248_15	PHROG	phrog_6745	endolysin	lysis
UHGV-1486248_15	UniRef90	UniRef90_A0A0E2H8T0	LysM domain-containing protein	NA
UHGV-1486248_15	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-1486248_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1486248_15	Pfam	PF05257	CHAP domain	CHAP
UHGV-1486248_15	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1486248_15	COG	COG1388	LysM repeat	NA
UHGV-1486248_15	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-1486248_16	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-1486248_18	PHROG	phrog_3754	NA	unknown function
UHGV-1486248_18	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1486248_19	PHROG	phrog_21718	NA	unknown function
UHGV-1486248_19	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1486248_20	PHROG	phrog_22984	NA	unknown function
UHGV-1486248_21	PHROG	phrog_16490	NA	unknown function
UHGV-1486248_21	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-1486248_22	PHROG	phrog_20016	NA	unknown function
UHGV-1486248_22	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1486248_22	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1486248_22	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1486248_23	Structural annotation	PF12510	NA	NA
UHGV-1486248_24	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1486248_25	KOfam	K14059	int; integrase	NA
UHGV-1486248_25	PHROG	phrog_1	integrase	integration and excision
UHGV-1486248_25	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-1486248_25	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-1486248_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1486248_25	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1486248_25	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1486248_26	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-1486248_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1486248_26	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-1486248_27	UniRef90	UniRef90_A0A3D1I232	zinc_ribbon_2 domain-containing protein	NA
UHGV-1486248_27	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-1486248_27	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-1486248_28	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1486248_28	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1486248_28	UniRef90	UniRef90_A0A1Y4HX66	HTH cro/C1-type domain-containing protein	NA
UHGV-1486248_28	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-1486248_28	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1486248_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1486248_28	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1486248_30	PHROG	phrog_1257	ribosome associated inhibitor A; zinc finger domain	moron, auxiliary metabolic gene and host takeover
UHGV-1486248_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1486248_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1486248_31	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-1486248_31	eggNOG-mapper	537013.CLOSTMETH_03630	Helix-turn-helix XRE-family like proteins	NA
UHGV-1486248_31	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1486248_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1486248_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1486248_33	Structural annotation	PF11112, COG3311	NA	NA
UHGV-1486248_35	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1486248_35	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1486248_37	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1486248_37	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-1486248_37	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-1486248_38	PHROG	phrog_1029	NA	unknown function
UHGV-1486248_38	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-1486248_38	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1486248_40	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-1486248_40	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-1486248_40	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-1486248_41	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-1486248_41	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1486248_42	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1486248_42	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1486248_42	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1486248_42	Pfam	PF05772	NinB protein	NinB
UHGV-1486248_42	Structural annotation	PF05772	NA	NA
UHGV-1486248_43	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1486248_44	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1486248_44	UniRef90	UniRef90_A0A1I0TSJ1	Helix-turn-helix domain of resolvase	NA
UHGV-1486248_44	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-1486248_44	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1486248_44	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1486248_44	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1486248_44	Structural annotation	PF07463, PF13392	NA	NA
UHGV-1486248_45	PHROG	phrog_4973	NA	unknown function
UHGV-1486248_45	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-1486248_45	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-1486248_45	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1486248_45	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1486248_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1486248_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1486248_46	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-1486248_46	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-1486248_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1486248_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1486248_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1486248_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1486248_46	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1486248_47	PHROG	phrog_15768	NA	unknown function
UHGV-1486248_47	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-1486248_47	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-1486248_47	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-1486248_48	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1486248_48	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1486248_48	UniRef90	UniRef90_UPI00137A9A0F	ATP-binding protein	NA
UHGV-1486248_48	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-1486248_48	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1486248_48	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-1486248_48	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1486248_48	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-1486248_50	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1486248_50	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-1486248_50	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-1486248_50	Pfam	PF06356	NA	DUF1064
UHGV-1486248_50	Structural annotation	PF06356	NA	NA
UHGV-1486248_51	PHROG	phrog_4433	NA	unknown function
UHGV-1486248_51	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-1486248_51	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-1486248_51	COG	COG5164	Transcription elongation factor SPT5	NA