UHGV-1486256

Genome information

Genome length 26,384 bps

CDS count 31

Completeness 74.65% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-1486256
vOTU ID	vOTU-034341
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0190791
BioSample	SAMEA2737993
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.33
Jumbo phage	No

Genome content
Genome length	26,384 bps
GC content	64.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	91.79%
Average CDS length	782.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1486256_1	KOfam	K07443	ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein	NA
UHGV-1486256_1	UniRef90	UniRef90_J0SL89	DNA-binding protein, methylated-DNA-[protein]-cysteine S-methyltransferase family	NA
UHGV-1486256_1	eggNOG-mapper	936548.HMPREF1136_1364	6-O-methylguanine DNA methyltransferase, DNA binding domain	NA
UHGV-1486256_1	Pfam	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain	DNA_binding_1
UHGV-1486256_1	COG	COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	NA
UHGV-1486256_2	eggNOG-mapper	1203556.HMPREF1478_01630	NA	NA
UHGV-1486256_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1486256_3	PHROG	phrog_1	integrase	integration and excision
UHGV-1486256_3	UniRef90	UniRef90_UPI001CA4BDAC	tyrosine-type recombinase/integrase	NA
UHGV-1486256_3	eggNOG-mapper	926564.KI911740_gene3383	Belongs to the 'phage' integrase family	NA
UHGV-1486256_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1486256_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1486256_3	Structural annotation	PF00589, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-1486256_4	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-1486256_4	PHROG	phrog_17803	phosphodiesterase	other
UHGV-1486256_4	UniRef90	UniRef90_A0A1S1ELK3	GP-PDE domain-containing protein	NA
UHGV-1486256_4	eggNOG-mapper	888052.HMPREF9006_0953	glycerophosphoryl diester phosphodiesterase	NA
UHGV-1486256_4	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-1486256_4	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-1486256_4	Structural annotation	PF03009, MF_02227, NF006989, COG0584	NA	NA
UHGV-1486256_5	PHROG	phrog_30808	NA	unknown function
UHGV-1486256_5	UniRef90	UniRef90_A0A7U0HMP2	Collagen-like protein	NA
UHGV-1486256_6	PHROG	phrog_28842	NA	unknown function
UHGV-1486256_6	Structural annotation	PF08400, TIGR04134, COG3126	NA	NA
UHGV-1486256_7	PHROG	phrog_15808	NA	unknown function
UHGV-1486256_7	UniRef90	UniRef90_Z4X4B6	PF10874 family protein	NA
UHGV-1486256_8	eggNOG-mapper	883077.HMPREF9241_01713	NA	NA
UHGV-1486256_9	PHROG	phrog_21825	endolysin	lysis
UHGV-1486256_9	UniRef90	UniRef90_UPI001C68242F	CHAP domain-containing protein	NA
UHGV-1486256_9	eggNOG-mapper	883077.HMPREF9241_01712	CHAP domain	NA
UHGV-1486256_9	Pfam	PF05257	CHAP domain	CHAP
UHGV-1486256_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1486256_9	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-1486256_11	PHROG	phrog_31345	NA	unknown function
UHGV-1486256_11	Structural annotation	PF15868, NF012201	NA	NA
UHGV-1486256_12	PHROG	phrog_32674	NA	unknown function
UHGV-1486256_12	Structural annotation	PF17758, MF_00075, NF003082, COG0361	NA	NA
UHGV-1486256_13	PHROG	phrog_1887	tail protein	tail
UHGV-1486256_13	UniRef90	UniRef90_X6PXW6	Putative phage tail protein	NA
UHGV-1486256_13	eggNOG-mapper	525246.HMPREF0058_1253	NA	NA
UHGV-1486256_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1486256_14	PHROG	phrog_30446	NA	unknown function
UHGV-1486256_14	Structural annotation	PF00629, PF06995, NF033675, TIGR01633, COG3499	NA	NA
UHGV-1486256_15	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1486256_15	PHROG	phrog_971	endolysin	lysis
UHGV-1486256_15	UniRef90	UniRef90_A0A1S1ELJ1	NlpC/P60 domain-containing protein	NA
UHGV-1486256_15	eggNOG-mapper	1680.BADO_1579	phage tail tape measure protein	NA
UHGV-1486256_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1486256_15	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1486256_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1486256_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1486256_15	Structural annotation	PF20155, NF033742, COG3941	NA	NA
UHGV-1486256_17	PHROG	phrog_24495	NA	unknown function
UHGV-1486256_19	PHROG	phrog_476	major tail protein	tail
UHGV-1486256_19	UniRef90	UniRef90_A0A1L7R9W6	Major tail protein	NA
UHGV-1486256_19	eggNOG-mapper	525246.HMPREF0058_1249	NA	NA
UHGV-1486256_19	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1486256_20	PHROG	phrog_37847	NA	unknown function
UHGV-1486256_20	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-1486256_21	PHROG	phrog_16886	NA	unknown function
UHGV-1486256_21	UniRef90	UniRef90_UPI001552BA5E	HK97 gp10 family phage protein	NA
UHGV-1486256_21	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1486256_22	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1486256_23	PHROG	phrog_2377	head-tail adaptor Ad1	connector
UHGV-1486256_23	UniRef90	UniRef90_W5TUL8	Putative bacteriophage protein	NA
UHGV-1486256_23	Structural annotation	TIGR02215	NA	NA
UHGV-1486256_25	PHROG	phrog_267	major head protein	head and packaging
UHGV-1486256_25	UniRef90	UniRef90_A0A543I5J5	P22 coat protein Gp5	NA
UHGV-1486256_25	eggNOG-mapper	1381751.JAJB01000050_gene145	P22 coat protein-protein 5 domain protein	NA
UHGV-1486256_25	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1486256_26	PHROG	phrog_2592	head scaffolding protein	head and packaging
UHGV-1486256_26	UniRef90	UniRef90_W5TNY3	Putative bacteriophage protein	NA
UHGV-1486256_26	eggNOG-mapper	1415166.NONO_c60730	NA	NA
UHGV-1486256_27	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1486256_27	UniRef90	UniRef90_A0A1S1EK40	CdiA_C domain-containing protein	NA
UHGV-1486256_27	eggNOG-mapper	591157.SSLG_02646	NA	NA
UHGV-1486256_27	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1486256_27	Structural annotation	PF18451	NA	NA
UHGV-1486256_28	PHROG	phrog_104	portal protein	head and packaging
UHGV-1486256_28	UniRef90	UniRef90_UPI001C66A0B7	phage portal protein	NA
UHGV-1486256_28	eggNOG-mapper	1415166.NONO_c60710	NA	NA
UHGV-1486256_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1486256_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1486256_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1486256_29	UniRef90	UniRef90_A0A430JUG0	Terminase	NA
UHGV-1486256_29	eggNOG-mapper	591157.SSLG_02648	Terminase	NA
UHGV-1486256_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1486256_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1486256_30	PHROG	phrog_226	minor tail protein	tail
UHGV-1486256_30	UniRef90	UniRef90_A0A0U1D3K1	Bacteriophage protein	NA
UHGV-1486256_30	eggNOG-mapper	1287475.HMPREF1650_04200	NA	NA
UHGV-1486256_31	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1486256_31	UniRef90	UniRef90_A0A7W3JH25	Primase-polymerase (Primpol)-like protein	NA
UHGV-1486256_31	eggNOG-mapper	1123024.AUII01000012_gene4175	Phage plasmid primase, P4 family domain protein	NA
UHGV-1486256_31	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1486256_31	Structural annotation	PF09250	NA	NA