UHGV-1486377

Genome information

vOTU vOTU-019062

Genome length 25,482 bps

CDS count 40

Completeness 62.63% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-1486377
vOTU ID	vOTU-019062
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0185279
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.9
Jumbo phage	No

Genome content
Genome length	25,482 bps
GC content	39.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	93.61%
Average CDS length	601.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1486377_1	PHROG	phrog_9534	head protein	head and packaging
UHGV-1486377_1	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-1486377_2	PHROG	phrog_538	minor tail protein	tail
UHGV-1486377_2	UniRef90	UniRef90_UPI001C394BA7	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1486377_2	eggNOG-mapper	428127.EUBDOL_01212	NA	NA
UHGV-1486377_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1486377_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1486377_3	PHROG	phrog_36410	NA	unknown function
UHGV-1486377_3	UniRef90	UniRef90_UPI001C38AECF	phage tail family protein	NA
UHGV-1486377_3	eggNOG-mapper	428127.EUBDOL_01213	phage tail	NA
UHGV-1486377_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-1486377_3	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1486377_4	PHROG	phrog_19074	NA	unknown function
UHGV-1486377_4	UniRef90	UniRef90_A0A3A6DL62	Phage tail tape measure protein	NA
UHGV-1486377_4	eggNOG-mapper	428127.EUBDOL_01214	Phage tail tape measure protein, TP901 family	NA
UHGV-1486377_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1486377_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1486377_4	COG	COG3883	NA	NA
UHGV-1486377_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1486377_5	PHROG	phrog_706	NA	unknown function
UHGV-1486377_5	UniRef90	UniRef90_UPI000466AAE6	Gp15 family bacteriophage protein	NA
UHGV-1486377_5	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-1486377_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1486377_5	Structural annotation	PF06854	NA	NA
UHGV-1486377_6	PHROG	phrog_4450	NA	unknown function
UHGV-1486377_7	PHROG	phrog_3099	NA	unknown function
UHGV-1486377_7	eggNOG-mapper	428127.EUBDOL_01218	NA	NA
UHGV-1486377_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1486377_8	PHROG	phrog_3266	tail completion	connector
UHGV-1486377_8	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-1486377_8	eggNOG-mapper	428127.EUBDOL_01219	NA	NA
UHGV-1486377_8	Structural annotation	PF12691	NA	NA
UHGV-1486377_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1486377_9	UniRef90	UniRef90_UPI0003FD237D	minor capsid protein	NA
UHGV-1486377_9	eggNOG-mapper	428127.EUBDOL_01220	NA	NA
UHGV-1486377_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1486377_9	Structural annotation	PF11114	NA	NA
UHGV-1486377_10	Pfam	PF20536	NA	DUF6751
UHGV-1486377_10	Structural annotation	PF20536, COG1853	NA	NA
UHGV-1486377_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1486377_11	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-1486377_12	PHROG	phrog_267	major head protein	head and packaging
UHGV-1486377_12	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-1486377_12	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-1486377_12	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1486377_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1486377_13	UniRef90	UniRef90_UPI00142FDD09	phage scaffolding protein	NA
UHGV-1486377_13	eggNOG-mapper	642492.Clole_0820	PFAM Phage minor structural	NA
UHGV-1486377_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1486377_13	Structural annotation	PF06810	NA	NA
UHGV-1486377_14	PHROG	phrog_3675	NA	unknown function
UHGV-1486377_14	UniRef90	UniRef90_UPI001D09CC06	YjcQ family protein	NA
UHGV-1486377_14	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-1486377_14	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1486377_14	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1486377_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1486377_16	UniRef90	UniRef90_A0A3R6Q5I6	Minor capsid protein	NA
UHGV-1486377_16	eggNOG-mapper	428127.EUBDOL_01227	Phage minor capsid protein 2	NA
UHGV-1486377_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1486377_16	COG	COG2369	NA	NA
UHGV-1486377_16	Structural annotation	PF06152	NA	NA
UHGV-1486377_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-1486377_17	UniRef90	UniRef90_A0A3E3EF92	Phage portal protein	NA
UHGV-1486377_17	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-1486377_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1486377_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1486377_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1486377_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1486377_18	UniRef90	UniRef90_A8RC01	Phage terminase, large subunit, PBSX family	NA
UHGV-1486377_18	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-1486377_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1486377_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1486377_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1486377_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-1486377_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1486377_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1486377_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1486377_19	UniRef90	UniRef90_A0A1Q9JQ42	Terminase small subunit	NA
UHGV-1486377_19	eggNOG-mapper	641112.ACOK01000073_gene2887	Terminase small subunit	NA
UHGV-1486377_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1486377_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1486377_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1486377_20	Structural annotation	PF01920, TIGR01636	NA	NA
UHGV-1486377_23	Structural annotation	PF02185, COG5420	NA	NA
UHGV-1486377_26	PHROG	phrog_3205	NA	unknown function
UHGV-1486377_26	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-1486377_26	eggNOG-mapper	1158602.I590_02965	NA	NA
UHGV-1486377_27	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-1486377_27	UniRef90	UniRef90_UPI001C25836D	dUTPase	NA
UHGV-1486377_27	eggNOG-mapper	929506.CbC4_0066	PFAM dUTPase	NA
UHGV-1486377_27	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-1486377_27	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-1486377_27	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1486377_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1486377_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1486377_28	UniRef90	UniRef90_A0A380LMA5	Single-stranded DNA-binding protein	NA
UHGV-1486377_28	eggNOG-mapper	1123313.ATUT01000010_gene1556	Single-stranded DNA-binding protein	NA
UHGV-1486377_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1486377_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1486377_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1486377_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1486377_28	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1486377_30	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1486377_30	UniRef90	UniRef90_A0A350TXF2	Phage_rep_org_N domain-containing protein	NA
UHGV-1486377_30	eggNOG-mapper	626523.GCWU000342_01039	DnaD domain protein	NA
UHGV-1486377_30	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1486377_30	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1486377_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1486377_30	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-1486377_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1486377_31	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1486377_31	UniRef90	UniRef90_A0A350TIB2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1486377_31	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-1486377_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1486377_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1486377_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1486377_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1486377_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1486377_32	UniRef90	UniRef90_UPI0014317E61	recombinase RecT	NA
UHGV-1486377_32	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-1486377_32	Pfam	PF03837	RecT family	RecT
UHGV-1486377_32	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1486377_32	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1486377_32	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1486377_33	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1486377_33	UniRef90	UniRef90_A0A3N0HYK4	Endonuclease	NA
UHGV-1486377_33	eggNOG-mapper	1121091.AUMP01000032_gene3074	Phage-related protein	NA
UHGV-1486377_33	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1486377_33	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1486377_33	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1486377_33	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1486377_35	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1486377_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1486377_38	PHROG	phrog_6058	NA	unknown function
UHGV-1486377_38	eggNOG-mapper	658088.HMPREF0987_00666	NA	NA
UHGV-1486377_38	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1486377_40	PHROG	phrog_14657	NA	unknown function
UHGV-1486377_40	UniRef90	UniRef90_A0A374RSX5	NA	NA
UHGV-1486377_40	eggNOG-mapper	518637.EUBIFOR_00253	NA	NA
UHGV-1486377_40	Pfam	PF13780	NA	DUF4176
UHGV-1486377_40	COG	COG4495	NA	NA
UHGV-1486377_40	Structural annotation	PF13780, COG4495	NA	NA