UHGV-1486453

Genome information

Genome length 19,493 bps

CDS count 30

Completeness 60.61% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-1486453
vOTU ID	vOTU-035839
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0141798
BioSample	SAMEA2042501
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.1
Jumbo phage	No

Genome content
Genome length	19,493 bps
GC content	55.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	95.49%
Average CDS length	621.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1486453_2	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-1486453_2	UniRef90	UniRef90_A0A1Q6RRT9	Prophage_tail domain-containing protein	NA
UHGV-1486453_2	eggNOG-mapper	1033744.CAEL01000029_gene1269	NA	NA
UHGV-1486453_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1486453_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1486453_2	COG	COG4926	Phage-related protein	NA
UHGV-1486453_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1486453_3	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1486453_3	UniRef90	UniRef90_UPI001C3EE391	phage tail family protein	NA
UHGV-1486453_3	eggNOG-mapper	1120972.AUMH01000011_gene118	NA	NA
UHGV-1486453_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-1486453_4	PHROG	phrog_240	head protein	head and packaging
UHGV-1486453_4	eggNOG-mapper	696281.Desru_1096	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-1486453_4	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-1486453_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1486453_5	UniRef90	UniRef90_UPI001C3FE757	phage tail family protein	NA
UHGV-1486453_5	eggNOG-mapper	1033744.CAEL01000029_gene1272	phage tail	NA
UHGV-1486453_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1486453_5	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1486453_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-1486453_5	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1486453_6	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-1486453_6	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1486453_6	UniRef90	UniRef90_A0A1E3BXP9	Phage tail protein	NA
UHGV-1486453_6	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-1486453_6	COG	COG5283	Phage-related tail protein	NA
UHGV-1486453_6	Structural annotation	PF20155, COG5280	NA	NA
UHGV-1486453_7	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-1486453_8	PHROG	phrog_88	major tail protein	tail
UHGV-1486453_8	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-1486453_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1486453_9	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-1486453_9	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-1486453_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1486453_9	Structural annotation	TIGR01725	NA	NA
UHGV-1486453_10	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-1486453_10	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-1486453_10	Structural annotation	PF05657	NA	NA
UHGV-1486453_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1486453_11	UniRef90	UniRef90_UPI001C3E9767	phage head closure protein	NA
UHGV-1486453_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1486453_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1486453_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1486453_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1486453_12	PHROG	phrog_5223	neck protein	connector
UHGV-1486453_12	UniRef90	UniRef90_UPI001C3EFD15	DNA-packaging protein	NA
UHGV-1486453_12	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-1486453_12	Structural annotation	TIGR01560	NA	NA
UHGV-1486453_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-1486453_13	UniRef90	UniRef90_UPI001C3EBC85	phage major capsid protein	NA
UHGV-1486453_13	eggNOG-mapper	1297617.JPJD01000020_gene308	Phage capsid family	NA
UHGV-1486453_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1486453_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1486453_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1486453_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1486453_14	KOfam	K06904	NA	NA
UHGV-1486453_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1486453_14	UniRef90	UniRef90_UPI001C3EDAFF	HK97 family phage prohead protease	NA
UHGV-1486453_14	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-1486453_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1486453_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1486453_14	COG	COG3740	Phage head maturation protease	NA
UHGV-1486453_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1486453_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-1486453_15	UniRef90	UniRef90_UPI001C3E9371	phage portal protein	NA
UHGV-1486453_15	eggNOG-mapper	1160721.RBI_I01584	Phage portal protein	NA
UHGV-1486453_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1486453_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1486453_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1486453_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1486453_16	UniRef90	UniRef90_UPI001C3EDE9F	terminase large subunit	NA
UHGV-1486453_16	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-1486453_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1486453_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1486453_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1486453_16	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1486453_17	PHROG	phrog_1066	NA	unknown function
UHGV-1486453_17	eggNOG-mapper	290402.Cbei_0905	NA	NA
UHGV-1486453_17	Structural annotation	TIGR01558, COG3747	NA	NA
UHGV-1486453_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1486453_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1486453_18	UniRef90	UniRef90_A0A1Q6RRQ5	HNHc domain-containing protein	NA
UHGV-1486453_18	eggNOG-mapper	1280689.AUJC01000011_gene1516	endonuclease activity	NA
UHGV-1486453_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1486453_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1486453_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1486453_19	UniRef90	UniRef90_UPI0018985E32	NA	NA
UHGV-1486453_19	eggNOG-mapper	484770.UFO1_1680	NA	NA
UHGV-1486453_19	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1486453_20	PHROG	phrog_3301	pyrophosphatase	other
UHGV-1486453_20	eggNOG-mapper	1449050.JNLE01000003_gene3900	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1486453_20	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1486453_20	Structural annotation	COG1694	NA	NA
UHGV-1486453_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1486453_21	eggNOG-mapper	1514668.JOOA01000001_gene223	NA	NA
UHGV-1486453_21	Structural annotation	PF21578, NF033538	NA	NA
UHGV-1486453_28	PHROG	phrog_21980	NA	unknown function
UHGV-1486453_28	UniRef90	UniRef90_A0A1Q6L1N6	NA	NA
UHGV-1486453_28	eggNOG-mapper	1235800.C819_00506	NA	NA
UHGV-1486453_28	Pfam	PF19789	NA	DUF6273
UHGV-1486453_28	Structural annotation	PF19789	NA	NA
UHGV-1486453_29	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1486453_29	PHROG	phrog_17417	NA	unknown function
UHGV-1486453_29	UniRef90	UniRef90_UPI001C3F882C	cell wall hydrolase	NA
UHGV-1486453_29	eggNOG-mapper	585394.RHOM_04810	COG3773 Cell wall hydrolyses involved in spore germination	NA
UHGV-1486453_29	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-1486453_29	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-1486453_29	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA