UHGV-1486530

Genome information

vOTU vOTU-020172

Genome length 27,956 bps

CDS count 44

Completeness 66.29% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-1486530
vOTU ID	vOTU-020172
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0199903
BioSample	SAMN05414915
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.11
Jumbo phage	No

Genome content
Genome length	27,956 bps
GC content	55.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	91.81%
Average CDS length	584.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1486530_1	PHROG	phrog_888	NA	unknown function
UHGV-1486530_1	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-1486530_1	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-1486530_1	Pfam	PF14471	NA	DUF4428
UHGV-1486530_1	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1486530_1	Structural annotation	PF15947, PF14471	NA	NA
UHGV-1486530_4	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-1486530_5	KOfam	K14059	int; integrase	NA
UHGV-1486530_5	PHROG	phrog_1	integrase	integration and excision
UHGV-1486530_5	UniRef90	UniRef90_A0A6N7TNW8	Tyrosine-type recombinase/integrase	NA
UHGV-1486530_5	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-1486530_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1486530_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1486530_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1486530_5	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1486530_7	Structural annotation	PF12510	NA	NA
UHGV-1486530_8	PHROG	phrog_20016	NA	unknown function
UHGV-1486530_8	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1486530_8	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1486530_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1486530_9	PHROG	phrog_16490	NA	unknown function
UHGV-1486530_9	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1486530_10	PHROG	phrog_22984	NA	unknown function
UHGV-1486530_11	PHROG	phrog_21718	NA	unknown function
UHGV-1486530_11	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1486530_12	PHROG	phrog_3754	NA	unknown function
UHGV-1486530_12	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-1486530_14	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1486530_14	Structural annotation	PF13560, NF040522	NA	NA
UHGV-1486530_15	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1486530_15	UniRef90	UniRef90_E6MK73	AP2 domain protein	NA
UHGV-1486530_15	eggNOG-mapper	887929.HMP0721_2409	NA	NA
UHGV-1486530_15	Structural annotation	PF18337, PF00847	NA	NA
UHGV-1486530_16	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-1486530_19	PHROG	phrog_15303	NA	unknown function
UHGV-1486530_20	PHROG	phrog_1863	NA	unknown function
UHGV-1486530_20	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-1486530_21	KOfam	K07273	acm; lysozyme	NA
UHGV-1486530_21	PHROG	phrog_291	endolysin	lysis
UHGV-1486530_21	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-1486530_21	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-1486530_21	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1486530_21	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1486530_21	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-1486530_22	Structural annotation	NF040910	NA	NA
UHGV-1486530_24	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-1486530_24	COG	COG5492	NA	NA
UHGV-1486530_25	PHROG	phrog_23587	NA	unknown function
UHGV-1486530_25	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-1486530_25	COG	COG5492	NA	NA
UHGV-1486530_25	Structural annotation	MF_04106	NA	NA
UHGV-1486530_26	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-1486530_26	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-1486530_26	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1486530_28	PHROG	phrog_3558	tail protein	tail
UHGV-1486530_28	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-1486530_28	eggNOG-mapper	1120933.ATUY01000004_gene1009	Prophage endopeptidase tail	NA
UHGV-1486530_28	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1486530_28	COG	COG4926	Phage-related protein	NA
UHGV-1486530_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1486530_29	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-1486530_29	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-1486530_29	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-1486530_29	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1486530_29	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1486530_29	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1486530_29	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1486530_32	PHROG	phrog_885	major tail protein	tail
UHGV-1486530_32	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1486530_32	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1486530_33	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-1486530_33	Structural annotation	PF13554	NA	NA
UHGV-1486530_34	PHROG	phrog_17977	NA	unknown function
UHGV-1486530_34	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-1486530_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1486530_36	PHROG	phrog_544	major head protein	head and packaging
UHGV-1486530_36	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-1486530_36	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1486530_36	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1486530_38	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1486530_38	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-1486530_38	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1486530_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1486530_39	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-1486530_39	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1486530_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1486530_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1486530_41	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1486530_41	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-1486530_41	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1486530_41	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1486530_41	COG	COG2369	NA	NA
UHGV-1486530_41	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1486530_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-1486530_42	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-1486530_42	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-1486530_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1486530_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1486530_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1486530_43	PHROG	phrog_10250	NA	unknown function
UHGV-1486530_43	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-1486530_43	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-1486530_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1486530_43	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1486530_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1486530_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-1486530_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1486530_44	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1486530_44	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-1486530_44	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1486530_44	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1486530_44	Structural annotation	PF16677	NA	NA