UHGV-1486967

Genome information

vOTU vOTU-019046

Genome length 27,718 bps

CDS count 37

Completeness 78.38% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-1486967
vOTU ID	vOTU-019046
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0198531
BioSample	SAMEA2738124
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	4.81
Jumbo phage	No

Genome content
Genome length	27,718 bps
GC content	65.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	91.46%
Average CDS length	686.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1486967_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1486967_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1486967_1	UniRef90	UniRef90_UPI001C665E61	single-stranded DNA-binding protein	NA
UHGV-1486967_1	eggNOG-mapper	888052.HMPREF9006_1337	Single-stranded DNA-binding protein	NA
UHGV-1486967_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1486967_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1486967_4	PHROG	phrog_15463	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1486967_4	UniRef90	UniRef90_A0A1S1EPJ6	HNHc domain-containing protein	NA
UHGV-1486967_4	eggNOG-mapper	1429046.RR21198_3140	endonuclease activity	NA
UHGV-1486967_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1486967_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1486967_5	PHROG	phrog_1467	NA	unknown function
UHGV-1486967_5	eggNOG-mapper	525246.HMPREF0058_1236	NA	NA
UHGV-1486967_7	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1486967_7	UniRef90	UniRef90_A0A2W1VGR1	DNA primase	NA
UHGV-1486967_7	eggNOG-mapper	1123024.AUII01000012_gene4175	Phage plasmid primase, P4 family domain protein	NA
UHGV-1486967_7	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1486967_7	Structural annotation	PF09250	NA	NA
UHGV-1486967_8	PHROG	phrog_226	minor tail protein	tail
UHGV-1486967_8	UniRef90	UniRef90_A0A0U1D3K1	Bacteriophage protein	NA
UHGV-1486967_8	eggNOG-mapper	1287475.HMPREF1650_04200	NA	NA
UHGV-1486967_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1486967_9	UniRef90	UniRef90_A0A430JUG0	Terminase	NA
UHGV-1486967_9	eggNOG-mapper	591157.SSLG_02648	Terminase	NA
UHGV-1486967_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1486967_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1486967_10	PHROG	phrog_104	portal protein	head and packaging
UHGV-1486967_10	UniRef90	UniRef90_UPI001C66A0B7	phage portal protein	NA
UHGV-1486967_10	eggNOG-mapper	1415166.NONO_c60710	NA	NA
UHGV-1486967_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1486967_10	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1486967_11	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1486967_11	UniRef90	UniRef90_A0A1S1EK40	CdiA_C domain-containing protein	NA
UHGV-1486967_11	eggNOG-mapper	591157.SSLG_02646	NA	NA
UHGV-1486967_11	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1486967_11	Structural annotation	PF18451	NA	NA
UHGV-1486967_12	PHROG	phrog_2592	head scaffolding protein	head and packaging
UHGV-1486967_12	UniRef90	UniRef90_W5TNY3	Putative bacteriophage protein	NA
UHGV-1486967_12	eggNOG-mapper	1415166.NONO_c60730	NA	NA
UHGV-1486967_13	PHROG	phrog_267	major head protein	head and packaging
UHGV-1486967_13	UniRef90	UniRef90_A0A543I5J5	P22 coat protein Gp5	NA
UHGV-1486967_13	eggNOG-mapper	1381751.JAJB01000050_gene145	P22 coat protein-protein 5 domain protein	NA
UHGV-1486967_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1486967_15	PHROG	phrog_2377	head-tail adaptor Ad1	connector
UHGV-1486967_15	UniRef90	UniRef90_W5TUL8	Putative bacteriophage protein	NA
UHGV-1486967_15	Structural annotation	TIGR02215	NA	NA
UHGV-1486967_16	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1486967_17	PHROG	phrog_16886	NA	unknown function
UHGV-1486967_17	UniRef90	UniRef90_UPI001552BA5E	HK97 gp10 family phage protein	NA
UHGV-1486967_17	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1486967_18	PHROG	phrog_37847	NA	unknown function
UHGV-1486967_18	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-1486967_19	PHROG	phrog_476	major tail protein	tail
UHGV-1486967_19	UniRef90	UniRef90_A0A1L7R9W6	Major tail protein	NA
UHGV-1486967_19	eggNOG-mapper	525246.HMPREF0058_1249	NA	NA
UHGV-1486967_19	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1486967_21	PHROG	phrog_24495	NA	unknown function
UHGV-1486967_23	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1486967_23	PHROG	phrog_971	endolysin	lysis
UHGV-1486967_23	UniRef90	UniRef90_A0A1S1ELJ1	NlpC/P60 domain-containing protein	NA
UHGV-1486967_23	eggNOG-mapper	1680.BADO_1579	phage tail tape measure protein	NA
UHGV-1486967_23	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1486967_23	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1486967_23	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1486967_23	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1486967_23	Structural annotation	PF20155, NF033742, COG3941	NA	NA
UHGV-1486967_24	PHROG	phrog_30446	NA	unknown function
UHGV-1486967_25	PHROG	phrog_1887	tail protein	tail
UHGV-1486967_25	UniRef90	UniRef90_X6PXW6	Putative phage tail protein	NA
UHGV-1486967_25	eggNOG-mapper	525246.HMPREF0058_1253	NA	NA
UHGV-1486967_25	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1486967_26	PHROG	phrog_32674	NA	unknown function
UHGV-1486967_26	Structural annotation	PF17758, MF_00075, NF003082, COG0361	NA	NA
UHGV-1486967_27	PHROG	phrog_31345	NA	unknown function
UHGV-1486967_27	Structural annotation	PF15868, NF012201	NA	NA
UHGV-1486967_29	PHROG	phrog_21825	endolysin	lysis
UHGV-1486967_29	UniRef90	UniRef90_A0A0V8RPY9	Peptidase C51 domain-containing protein	NA
UHGV-1486967_29	eggNOG-mapper	883077.HMPREF9241_01712	CHAP domain	NA
UHGV-1486967_29	Pfam	PF05257	CHAP domain	CHAP
UHGV-1486967_29	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1486967_29	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-1486967_30	eggNOG-mapper	525246.HMPREF0058_1258	NA	NA
UHGV-1486967_31	PHROG	phrog_15808	NA	unknown function
UHGV-1486967_31	UniRef90	UniRef90_Z4X4B6	PF10874 family protein	NA
UHGV-1486967_32	UniRef90	UniRef90_X6PZB8	ROS/MUCR transcriptional regulator domain protein	NA
UHGV-1486967_32	eggNOG-mapper	1287475.HMPREF1650_04065	ROS/MUCR transcriptional regulator protein	NA
UHGV-1486967_32	Pfam	PF05443	ROS/MUCR transcriptional regulator protein	ROS_MUCR
UHGV-1486967_32	Structural annotation	PF05443, NF040990, COG4957	NA	NA
UHGV-1486967_34	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1486967_34	UniRef90	UniRef90_UPI000856BDF0	transcriptional regulator	NA
UHGV-1486967_34	eggNOG-mapper	1120933.ATUY01000002_gene66	Transcriptional regulator	NA
UHGV-1486967_34	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1486967_35	UniRef90	UniRef90_J0NW70	DNA-binding helix-turn-helix protein	NA
UHGV-1486967_35	eggNOG-mapper	1125718.HMPREF1318_2351	Helix-turn-helix XRE-family like proteins	NA
UHGV-1486967_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1486967_35	Structural annotation	PF14590, TIGR03070, COG2944	NA	NA
UHGV-1486967_37	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1486967_37	PHROG	phrog_1	integrase	integration and excision
UHGV-1486967_37	UniRef90	UniRef90_UPI001CA4BDAC	tyrosine-type recombinase/integrase	NA
UHGV-1486967_37	eggNOG-mapper	926564.KI911740_gene3383	Belongs to the 'phage' integrase family	NA
UHGV-1486967_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1486967_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA