UHGV-1487628

Genome information

Genome length 27,731 bps

CDS count 42

Completeness 79.36% (medium-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-1487628
vOTU ID	vOTU-022894
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0198615
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.41
Jumbo phage	No

Genome content
Genome length	27,731 bps
GC content	37.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	90.49%
Average CDS length	601.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1487628_1	PHROG	phrog_19280	NA	unknown function
UHGV-1487628_1	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-1487628_1	Structural annotation	PF10651, NF010435	NA	NA
UHGV-1487628_4	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1487628_4	UniRef90	UniRef90_A0A7C9HAK5	Prophage_tail domain-containing protein	NA
UHGV-1487628_4	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1487628_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1487628_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1487628_4	COG	COG4926	Phage-related protein	NA
UHGV-1487628_4	Structural annotation	PF14594, PF04862, PF20843, TIGR01665, NF033675, COG4926, COG4266	NA	NA
UHGV-1487628_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1487628_5	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-1487628_5	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-1487628_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-1487628_5	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1487628_6	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1487628_6	UniRef90	UniRef90_A0A0M6WZJ0	PhageMin_Tail domain-containing protein	NA
UHGV-1487628_6	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-1487628_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1487628_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1487628_6	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1487628_6	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-1487628_7	eggNOG-mapper	411468.CLOSCI_00541	NA	NA
UHGV-1487628_8	PHROG	phrog_29863	NA	unknown function
UHGV-1487628_8	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-1487628_8	Structural annotation	PF17388	NA	NA
UHGV-1487628_9	PHROG	phrog_2175	protein with Ig domain	other
UHGV-1487628_9	eggNOG-mapper	457421.CBFG_03714	NA	NA
UHGV-1487628_9	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1487628_10	eggNOG-mapper	411468.CLOSCI_00544	NA	NA
UHGV-1487628_10	Structural annotation	PF20765	NA	NA
UHGV-1487628_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1487628_11	UniRef90	UniRef90_A0A7C9LD40	HK97 gp10 family phage protein	NA
UHGV-1487628_11	eggNOG-mapper	397291.C804_05237	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1487628_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1487628_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1487628_12	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1487628_12	UniRef90	UniRef90_UPI00189EBA11	phage head closure protein	NA
UHGV-1487628_12	eggNOG-mapper	1121423.JONT01000041_gene949	head-tail adaptor	NA
UHGV-1487628_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1487628_12	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1487628_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1487628_13	PHROG	phrog_5223	neck protein	connector
UHGV-1487628_13	UniRef90	UniRef90_A0A7C9LAV1	DNA-packaging protein	NA
UHGV-1487628_13	eggNOG-mapper	1203606.HMPREF1526_00977	NA	NA
UHGV-1487628_14	Pfam	PF02037	SAP domain	SAP
UHGV-1487628_14	Structural annotation	PF14000	NA	NA
UHGV-1487628_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-1487628_15	UniRef90	UniRef90_C9LCN3	Phage major capsid protein, HK97 family	NA
UHGV-1487628_15	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-1487628_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1487628_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1487628_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1487628_15	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1487628_16	KOfam	K06904	NA	NA
UHGV-1487628_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1487628_16	UniRef90	UniRef90_A0A7C9L2H1	HK97 family phage prohead protease	NA
UHGV-1487628_16	eggNOG-mapper	397290.C810_00420	Phage prohead protease, HK97 family	NA
UHGV-1487628_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1487628_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1487628_16	COG	COG3740	Phage head maturation protease	NA
UHGV-1487628_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1487628_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-1487628_17	UniRef90	UniRef90_A0A7C9LEF5	Phage portal protein	NA
UHGV-1487628_17	eggNOG-mapper	397290.C810_00419	Phage portal protein	NA
UHGV-1487628_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1487628_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1487628_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1487628_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1487628_18	UniRef90	UniRef90_A0A7C9KZF1	Terminase large subunit	NA
UHGV-1487628_18	eggNOG-mapper	397290.C810_00418	Phage Terminase	NA
UHGV-1487628_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1487628_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1487628_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1487628_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1487628_19	PHROG	phrog_1066	NA	unknown function
UHGV-1487628_19	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-1487628_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1487628_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1487628_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1487628_20	UniRef90	UniRef90_R6SPQ8	HNHc domain-containing protein	NA
UHGV-1487628_20	eggNOG-mapper	411470.RUMGNA_02060	HNH endonuclease	NA
UHGV-1487628_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1487628_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1487628_21	PHROG	phrog_1558	NA	unknown function
UHGV-1487628_21	UniRef90	UniRef90_UPI001EE9266C	sigma-70 region 4 domain-containing protein	NA
UHGV-1487628_21	eggNOG-mapper	397290.C810_00415	NA	NA
UHGV-1487628_21	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-1487628_22	UniRef90	UniRef90_A0A3R6K9T6	Chemotaxis protein	NA
UHGV-1487628_22	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-1487628_22	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-1487628_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1487628_25	PHROG	phrog_15982	NA	unknown function
UHGV-1487628_25	UniRef90	UniRef90_A0A7C9HAH3	NA	NA
UHGV-1487628_25	eggNOG-mapper	411470.RUMGNA_02052	NA	NA
UHGV-1487628_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1487628_25	Pfam	PF12961	NA	DUF3850
UHGV-1487628_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1487628_25	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-1487628_26	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1487628_26	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1487628_26	UniRef90	UniRef90_A0A7C9H418	AAA family ATPase	NA
UHGV-1487628_26	eggNOG-mapper	397288.C806_00082	AAA domain	NA
UHGV-1487628_26	Pfam	PF13614	AAA domain	AAA_31
UHGV-1487628_26	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1487628_26	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1487628_27	PHROG	phrog_824	NA	unknown function
UHGV-1487628_27	UniRef90	UniRef90_A0A7C9H491	VRR-NUC domain-containing protein	NA
UHGV-1487628_27	eggNOG-mapper	397290.C810_00407	VRR_NUC	NA
UHGV-1487628_27	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1487628_27	Structural annotation	PF08774	NA	NA
UHGV-1487628_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1487628_28	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-1487628_28	Structural annotation	PF21578	NA	NA
UHGV-1487628_29	PHROG	phrog_26861	NA	unknown function
UHGV-1487628_29	UniRef90	UniRef90_A0A1M6MM35	Single-strand binding protein family protein	NA
UHGV-1487628_29	eggNOG-mapper	1292035.H476_3036	Single-strand binding protein family	NA
UHGV-1487628_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1487628_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1487628_29	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1487628_30	UniRef90	UniRef90_UPI00157038BF	NA	NA
UHGV-1487628_30	eggNOG-mapper	1280688.AUJB01000009_gene1785	NA	NA
UHGV-1487628_30	Pfam	PF18941	NA	DUF5688
UHGV-1487628_32	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1487628_32	PHROG	phrog_1	integrase	integration and excision
UHGV-1487628_32	UniRef90	UniRef90_A0A6L5YHS5	Tyrosine-type recombinase/integrase	NA
UHGV-1487628_32	eggNOG-mapper	1188240.MYEA_5710	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1487628_32	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1487628_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1487628_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1487628_32	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1487628_33	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1487628_33	PHROG	phrog_5696	NA	unknown function
UHGV-1487628_33	UniRef90	UniRef90_A0A0M6WYD5	N6_Mtase domain-containing protein	NA
UHGV-1487628_33	eggNOG-mapper	1235835.C814_00379	N-6 DNA Methylase	NA
UHGV-1487628_33	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1487628_33	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1487628_33	Structural annotation	COG0286	NA	NA
UHGV-1487628_39	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1487628_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1487628_39	UniRef90	UniRef90_A0A373VSC9	XRE family transcriptional regulator	NA
UHGV-1487628_39	eggNOG-mapper	1235793.C809_03587	Helix-turn-helix XRE-family like proteins	NA
UHGV-1487628_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1487628_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1487628_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1487628_40	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1487628_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1487628_40	UniRef90	UniRef90_A0A358PUH8	XRE family transcriptional regulator	NA
UHGV-1487628_40	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-1487628_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1487628_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1487628_41	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1487628_41	UniRef90	UniRef90_A0A3D5LSQ6	XRE family transcriptional regulator	NA
UHGV-1487628_41	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1487628_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1487628_41	Structural annotation	PF01381, NF041951, COG1476	NA	NA