UHGV-1487880

Genome information

Genome length 38,254 bps

CDS count 67

Completeness 94.81% (high-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-1487880
vOTU ID	vOTU-012792
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0258933
BioSample	SAMN02334082
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.81% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.25
Jumbo phage	No

Genome content
Genome length	38,254 bps
GC content	36.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	92.78%
Average CDS length	532.08 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1487880_3	Structural annotation	PF10743	NA	NA
UHGV-1487880_7	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1487880_7	UniRef90	UniRef90_A0A843H976	YqaJ viral recombinase family protein	NA
UHGV-1487880_7	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-1487880_7	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1487880_7	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1487880_7	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1487880_7	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1487880_8	PHROG	phrog_674	NA	unknown function
UHGV-1487880_8	UniRef90	UniRef90_A0A843H741	NA	NA
UHGV-1487880_8	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-1487880_8	Pfam	PF07083	NA	DUF1351
UHGV-1487880_8	Structural annotation	PF07083	NA	NA
UHGV-1487880_9	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1487880_9	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1487880_9	UniRef90	UniRef90_UPI001D034282	recombinase RecT	NA
UHGV-1487880_9	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-1487880_9	Pfam	PF03837	RecT family	RecT
UHGV-1487880_9	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1487880_9	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1487880_9	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1487880_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1487880_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1487880_10	UniRef90	UniRef90_A0A315Y1G6	Single-stranded DNA-binding protein	NA
UHGV-1487880_10	eggNOG-mapper	1384066.JAGT01000001_gene1404	Single-stranded DNA-binding protein	NA
UHGV-1487880_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1487880_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1487880_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1487880_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1487880_10	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1487880_11	PHROG	phrog_15768	NA	unknown function
UHGV-1487880_11	UniRef90	UniRef90_UPI001BC856B4	NA	NA
UHGV-1487880_11	eggNOG-mapper	642492.Clole_0798	NA	NA
UHGV-1487880_11	AcrCatalog	cluster_38323	NA	NA
UHGV-1487880_11	Pfam	PF19808	NA	DUF6291
UHGV-1487880_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1487880_11	Structural annotation	PF19808	NA	NA
UHGV-1487880_22	eggNOG-mapper	1203606.HMPREF1526_00222	NA	NA
UHGV-1487880_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1487880_25	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1487880_25	UniRef90	UniRef90_A0A374U439	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1487880_25	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1487880_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1487880_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1487880_25	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1487880_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1487880_26	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1487880_26	UniRef90	UniRef90_A0A7G7NBK6	ParB N-terminal-like domain containing protein	NA
UHGV-1487880_26	eggNOG-mapper	1123247.AUIJ01000022_gene281	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1487880_26	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1487880_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1487880_26	COG	COG0863	DNA modification methylase	NA
UHGV-1487880_26	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-1487880_27	PHROG	phrog_13321	NA	unknown function
UHGV-1487880_27	UniRef90	UniRef90_D4LDX5	DNA repair photolyase	NA
UHGV-1487880_27	eggNOG-mapper	1235790.C805_00085	DNA photolyase activity	NA
UHGV-1487880_27	COG	COG1533	DNA repair photolyase	NA
UHGV-1487880_27	Structural annotation	PF20903, MF_00660, NF033668, COG1180	NA	NA
UHGV-1487880_30	Structural annotation	PF18932	NA	NA
UHGV-1487880_34	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1487880_34	UniRef90	UniRef90_R9QM30	Terminase large subunit	NA
UHGV-1487880_34	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-1487880_34	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-1487880_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-1487880_35	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-1487880_35	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1487880_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1487880_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1487880_36	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1487880_36	UniRef90	UniRef90_A0A3D2MUF2	Phage_Mu_F domain-containing protein	NA
UHGV-1487880_36	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1487880_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1487880_36	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1487880_36	COG	COG2369	NA	NA
UHGV-1487880_36	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1487880_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1487880_37	UniRef90	UniRef90_A0A6A8M6L6	HK97 gp10 family phage protein	NA
UHGV-1487880_37	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1487880_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1487880_37	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1487880_38	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1487880_38	Structural annotation	PF06810	NA	NA
UHGV-1487880_39	PHROG	phrog_544	major head protein	head and packaging
UHGV-1487880_39	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1487880_39	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1487880_39	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1487880_41	PHROG	phrog_17977	NA	unknown function
UHGV-1487880_41	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1487880_41	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1487880_42	Structural annotation	PF11367	NA	NA
UHGV-1487880_43	PHROG	phrog_885	major tail protein	tail
UHGV-1487880_43	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-1487880_43	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1487880_43	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1487880_46	KOfam	K08757	APOA1; apolipoprotein A-I	NA
UHGV-1487880_46	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1487880_46	UniRef90	UniRef90_A0A6B9SV28	Putative tape measure protein	NA
UHGV-1487880_46	eggNOG-mapper	1123309.AQYB01000018_gene819	Phage tail tape measure protein TP901	NA
UHGV-1487880_46	COG	COG5412	Phage-related protein	NA
UHGV-1487880_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1487880_47	eggNOG-mapper	1540257.JQMW01000004_gene407	tail component	NA
UHGV-1487880_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-1487880_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1487880_48	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1487880_48	COG	COG4926	Phage-related protein	NA
UHGV-1487880_50	eggNOG-mapper	411473.RUMCAL_00421	tail collar domain protein	NA
UHGV-1487880_50	COG	COG4675	Phage tail collar domain	NA
UHGV-1487880_53	KOfam	K07273	acm; lysozyme	NA
UHGV-1487880_53	PHROG	phrog_291	endolysin	lysis
UHGV-1487880_53	UniRef90	UniRef90_UPI001D002A5A	glycoside hydrolase family 25 protein	NA
UHGV-1487880_53	eggNOG-mapper	1235793.C809_03470	Glycosyl hydrolases family 25	NA
UHGV-1487880_53	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1487880_53	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1487880_53	Structural annotation	PF01183, PF08460, MF_00496, NF033202, NF009621, COG3757	NA	NA
UHGV-1487880_54	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-1487880_55	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1487880_55	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1487880_55	UniRef90	UniRef90_UPI001C8DA3BD	helix-turn-helix domain-containing protein	NA
UHGV-1487880_55	eggNOG-mapper	1408321.JNJD01000010_gene1463	Helix-turn-helix XRE-family like proteins	NA
UHGV-1487880_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1487880_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1487880_55	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1487880_56	eggNOG-mapper	1484479.DI14_04650	NA	NA
UHGV-1487880_58	PHROG	phrog_3754	NA	unknown function
UHGV-1487880_58	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1487880_59	PHROG	phrog_21718	NA	unknown function
UHGV-1487880_59	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1487880_60	PHROG	phrog_22984	NA	unknown function
UHGV-1487880_61	PHROG	phrog_16490	NA	unknown function
UHGV-1487880_61	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1487880_62	PHROG	phrog_20016	NA	unknown function
UHGV-1487880_62	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1487880_62	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1487880_63	Structural annotation	PF12510	NA	NA
UHGV-1487880_65	UniRef90	UniRef90_A0A1C6K4A6	NA	NA
UHGV-1487880_65	eggNOG-mapper	1688.BCUN_1452	NA	NA
UHGV-1487880_65	Pfam	PF16729	NA	DUF5067
UHGV-1487880_66	KOfam	K14059	int; integrase	NA
UHGV-1487880_66	PHROG	phrog_1	integrase	integration and excision
UHGV-1487880_66	UniRef90	UniRef90_A0A7X9GK55	Site-specific integrase	NA
UHGV-1487880_66	eggNOG-mapper	1007096.BAGW01000006_gene1761	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1487880_66	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1487880_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1487880_66	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1487880_66	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1487880_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1487880_67	UniRef90	UniRef90_C3BNM5	Transcriptional regulator, XRE	NA
UHGV-1487880_67	eggNOG-mapper	315730.BcerKBAB4_3618	transcriptional	NA
UHGV-1487880_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1487880_67	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA