UHGV-1488072

Genome information

Genome length 16,478 bps

CDS count 23

Completeness 52.35% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1488072
vOTU ID	vOTU-035858
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0110969
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.11
Jumbo phage	No

Genome content
Genome length	16,478 bps
GC content	58.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	93.11%
Average CDS length	670.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1488072_1	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1488072_1	PHROG	phrog_27290	NA	unknown function
UHGV-1488072_1	UniRef90	UniRef90_A0A417TPE0	ParB domain-containing protein	NA
UHGV-1488072_1	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-1488072_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1488072_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1488072_1	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-1488072_4	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1488072_4	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-1488072_4	UniRef90	UniRef90_A0A417TSH5	Methyltransferase	NA
UHGV-1488072_4	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-1488072_4	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1488072_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1488072_4	COG	COG0863	DNA modification methylase	NA
UHGV-1488072_4	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1488072_6	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1488072_6	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-1488072_6	Structural annotation	PF01446	NA	NA
UHGV-1488072_7	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1488072_7	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1488072_7	UniRef90	UniRef90_A0A396QGN3	HNH endonuclease	NA
UHGV-1488072_7	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-1488072_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1488072_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1488072_8	PHROG	phrog_1066	NA	unknown function
UHGV-1488072_8	eggNOG-mapper	1203606.HMPREF1526_01333	NA	NA
UHGV-1488072_8	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1488072_10	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1488072_10	UniRef90	UniRef90_A0A396Q7Z1	Terminase large subunit	NA
UHGV-1488072_10	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-1488072_10	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1488072_10	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1488072_10	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1488072_10	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1488072_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-1488072_11	UniRef90	UniRef90_A0A396QRU6	Phage portal protein	NA
UHGV-1488072_11	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-1488072_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1488072_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1488072_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1488072_12	KOfam	K06904	NA	NA
UHGV-1488072_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1488072_12	UniRef90	UniRef90_A0A396QDF0	HK97 family phage prohead protease	NA
UHGV-1488072_12	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-1488072_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1488072_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1488072_12	COG	COG3740	Phage head maturation protease	NA
UHGV-1488072_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1488072_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-1488072_13	UniRef90	UniRef90_A0A417VTC4	Phage major capsid protein	NA
UHGV-1488072_13	eggNOG-mapper	1203606.HMPREF1526_01339	Phage capsid family	NA
UHGV-1488072_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1488072_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1488072_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1488072_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1488072_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1488072_14	UniRef90	UniRef90_A0A396Q9S6	Phage gp6-like head-tail connector protein	NA
UHGV-1488072_14	eggNOG-mapper	1209989.TepiRe1_2602	Phage gp6-like head-tail connector protein	NA
UHGV-1488072_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1488072_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1488072_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1488072_15	PHROG	phrog_25	head closure Hc1	connector
UHGV-1488072_15	UniRef90	UniRef90_A0A396Q875	Head-tail adaptor protein	NA
UHGV-1488072_15	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-1488072_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1488072_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1488072_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1488072_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1488072_16	UniRef90	UniRef90_UPI00189BF3BE	HK97 gp10 family phage protein	NA
UHGV-1488072_16	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1488072_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1488072_16	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1488072_17	PHROG	phrog_525	NA	unknown function
UHGV-1488072_17	Pfam	PF20765	NA	DUF6838
UHGV-1488072_17	Structural annotation	PF20765	NA	NA
UHGV-1488072_18	PHROG	phrog_1480	tail sheath	tail
UHGV-1488072_18	UniRef90	UniRef90_A0A396Q9E2	Phage tail protein	NA
UHGV-1488072_18	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-1488072_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1488072_18	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1488072_19	PHROG	phrog_365	tail protein	tail
UHGV-1488072_19	UniRef90	UniRef90_A0A417VUQ8	Terminase	NA
UHGV-1488072_19	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-1488072_19	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1488072_19	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1488072_20	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-1488072_20	eggNOG-mapper	632245.CLP_2608	NA	NA
UHGV-1488072_20	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-1488072_21	PHROG	phrog_23464	NA	unknown function
UHGV-1488072_21	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-1488072_21	COG	COG5283	Phage-related tail protein	NA
UHGV-1488072_21	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1488072_22	PHROG	phrog_23201	NA	unknown function
UHGV-1488072_22	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-1488072_22	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-1488072_22	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1488072_22	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-1488072_23	PHROG	phrog_400	tail protein	tail
UHGV-1488072_23	eggNOG-mapper	1120998.AUFC01000013_gene2950	Late control gene D protein	NA
UHGV-1488072_23	COG	COG3500	NA	NA