UHGV-1488307

Genome information

Genome length 19,550 bps

CDS count 31

Completeness 51.57% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-1488307
vOTU ID	vOTU-035863
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0142303
BioSample	SAMEA2737885
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.37
Jumbo phage	No

Genome content
Genome length	19,550 bps
GC content	40.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	91.68%
Average CDS length	584.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1488307_1	eggNOG-mapper	1173029.JH980292_gene3351	NA	NA
UHGV-1488307_2	PHROG	phrog_1281	NA	unknown function
UHGV-1488307_2	UniRef90	UniRef90_A0A374AHH0	NA	NA
UHGV-1488307_2	eggNOG-mapper	61647.LG71_03530	Phage-associated protein	NA
UHGV-1488307_2	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1488307_2	COG	COG3600	NA	NA
UHGV-1488307_2	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1488307_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1488307_3	PHROG	phrog_435	endolysin	lysis
UHGV-1488307_3	UniRef90	UniRef90_UPI0008317F47	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1488307_3	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1488307_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1488307_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1488307_3	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-1488307_4	PHROG	phrog_962	holin	lysis
UHGV-1488307_4	UniRef90	UniRef90_UPI001655FC48	phage holin	NA
UHGV-1488307_4	eggNOG-mapper	887929.HMP0721_1251	Bacteriophage holin	NA
UHGV-1488307_4	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1488307_4	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1488307_4	COG	COG5546	NA	NA
UHGV-1488307_4	Structural annotation	COG5546	NA	NA
UHGV-1488307_5	PHROG	phrog_4257	NA	unknown function
UHGV-1488307_5	eggNOG-mapper	1005705.HMPREF9967_1056	NA	NA
UHGV-1488307_6	PHROG	phrog_9994	NA	unknown function
UHGV-1488307_6	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-1488307_6	eggNOG-mapper	1321814.HMPREF9089_00941	NA	NA
UHGV-1488307_6	Structural annotation	PF20747	NA	NA
UHGV-1488307_7	PHROG	phrog_538	minor tail protein	tail
UHGV-1488307_7	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1488307_7	eggNOG-mapper	411461.DORFOR_00733	NA	NA
UHGV-1488307_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1488307_7	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1488307_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1488307_8	eggNOG-mapper	1280698.AUJS01000007_gene1048	NA	NA
UHGV-1488307_8	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1488307_9	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1488307_9	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1488307_9	UniRef90	UniRef90_UPI0004132D49	phage tail tape measure protein	NA
UHGV-1488307_9	eggNOG-mapper	1118059.CAHC01000003_gene808	Phage tail tape measure protein, TP901 family	NA
UHGV-1488307_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1488307_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1488307_9	COG	COG5283	Phage-related tail protein	NA
UHGV-1488307_10	PHROG	phrog_3033	NA	unknown function
UHGV-1488307_12	PHROG	phrog_88	major tail protein	tail
UHGV-1488307_12	UniRef90	UniRef90_A0A1K1YNJ2	Phage major tail protein, phi13 family	NA
UHGV-1488307_12	eggNOG-mapper	1384066.JAGT01000001_gene932	phage major tail protein, phi13 family	NA
UHGV-1488307_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1488307_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1488307_13	eggNOG-mapper	1123315.AUIP01000001_gene1429	NA	NA
UHGV-1488307_13	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1488307_14	UniRef90	UniRef90_UPI00040399DB	HK97 gp10 family phage protein	NA
UHGV-1488307_14	eggNOG-mapper	1121871.AUAT01000030_gene1030	NA	NA
UHGV-1488307_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1488307_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1488307_15	PHROG	phrog_19734	NA	unknown function
UHGV-1488307_15	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-1488307_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1488307_16	PHROG	phrog_749	NA	unknown function
UHGV-1488307_16	UniRef90	UniRef90_A0A371IJS1	Phage gp6-like head-tail connector protein	NA
UHGV-1488307_16	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-1488307_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-1488307_17	UniRef90	UniRef90_UPI001E2BCFCB	phage major capsid protein	NA
UHGV-1488307_17	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1488307_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1488307_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1488307_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1488307_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1488307_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1488307_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1488307_18	UniRef90	UniRef90_UPI000541F099	Clp protease ClpP	NA
UHGV-1488307_18	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1488307_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1488307_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1488307_18	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1488307_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-1488307_19	UniRef90	UniRef90_A4J7R3	Phage portal protein, HK97 family	NA
UHGV-1488307_19	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1488307_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1488307_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1488307_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1488307_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1488307_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1488307_20	UniRef90	UniRef90_A0A1M6MVG1	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1488307_20	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-1488307_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1488307_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1488307_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1488307_21	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1488307_21	UniRef90	UniRef90_UPI001E64C17F	P27 family phage terminase small subunit	NA
UHGV-1488307_21	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-1488307_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1488307_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1488307_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1488307_22	UniRef90	UniRef90_A0A7X8Z9F1	HNH endonuclease	NA
UHGV-1488307_22	eggNOG-mapper	86416.Clopa_0335	HNH nucleases	NA
UHGV-1488307_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1488307_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1488307_23	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-1488307_23	Structural annotation	PF07878, NF010256, COG4877	NA	NA
UHGV-1488307_27	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1488307_27	UniRef90	UniRef90_A0A4S1EGJ7	NA	NA
UHGV-1488307_27	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-1488307_27	Pfam	PF06356	NA	DUF1064
UHGV-1488307_27	Structural annotation	PF06356	NA	NA
UHGV-1488307_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1488307_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1488307_30	UniRef90	UniRef90_V1CFG6	Single-stranded DNA-binding protein	NA
UHGV-1488307_30	eggNOG-mapper	1321814.HMPREF9089_01469	Single-stranded DNA-binding protein	NA
UHGV-1488307_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1488307_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1488307_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1488307_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1488307_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA