UHGV-1488516

Genome information

vOTU vOTU-019576

Genome length 27,826 bps

CDS count 50

Completeness 56.81% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-1488516
vOTU ID	vOTU-019576
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0199170
BioSample	SAMEA3664562
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.73
Jumbo phage	No

Genome content
Genome length	27,826 bps
GC content	53.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	94.00%
Average CDS length	528.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1488516_1	PHROG	phrog_18079	NA	unknown function
UHGV-1488516_1	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-1488516_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1488516_1	Structural annotation	NF007410	NA	NA
UHGV-1488516_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1488516_3	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1488516_3	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-1488516_3	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1488516_3	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1488516_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1488516_3	COG	COG0863	DNA modification methylase	NA
UHGV-1488516_3	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1488516_6	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-1488516_6	PHROG	phrog_200	lipoprotein	other
UHGV-1488516_6	UniRef90	UniRef90_A0A1Y3TPZ8	Membrane protease	NA
UHGV-1488516_6	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-1488516_6	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-1488516_6	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-1488516_6	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-1488516_7	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1488516_7	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-1488516_7	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-1488516_8	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1488516_8	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-1488516_8	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1488516_10	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1488516_10	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-1488516_10	Structural annotation	NF001611, COG1694	NA	NA
UHGV-1488516_13	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-1488516_13	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-1488516_15	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1488516_20	UniRef90	UniRef90_U2R3C0	Nascent polypeptide-associated complex domain protein	NA
UHGV-1488516_20	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1488516_20	Structural annotation	PF13542	NA	NA
UHGV-1488516_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1488516_21	PHROG	phrog_10250	NA	unknown function
UHGV-1488516_21	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-1488516_21	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1488516_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1488516_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1488516_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1488516_21	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1488516_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-1488516_22	UniRef90	UniRef90_UPI00189D71DB	phage capsid protein	NA
UHGV-1488516_22	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-1488516_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1488516_24	PHROG	phrog_8680	NA	unknown function
UHGV-1488516_24	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-1488516_24	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1488516_24	Pfam	PF14386	NA	DUF4417
UHGV-1488516_24	Structural annotation	PF14386	NA	NA
UHGV-1488516_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1488516_25	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-1488516_25	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1488516_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1488516_25	COG	COG2369	NA	NA
UHGV-1488516_25	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-1488516_27	PHROG	phrog_3675	NA	unknown function
UHGV-1488516_27	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-1488516_27	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-1488516_27	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1488516_27	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1488516_29	PHROG	phrog_3896	NA	unknown function
UHGV-1488516_29	UniRef90	UniRef90_UPI00164BFAB0	ribbon-helix-helix protein, CopG family	NA
UHGV-1488516_29	eggNOG-mapper	476272.RUMHYD_01985	NA	NA
UHGV-1488516_31	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1488516_31	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1488516_31	UniRef90	UniRef90_A0A1Y3S9C0	Bro-N domain-containing protein	NA
UHGV-1488516_31	eggNOG-mapper	1378168.N510_03077	BRO family, N-terminal domain protein	NA
UHGV-1488516_31	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1488516_31	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1488516_31	COG	COG3617	Prophage antirepressor	NA
UHGV-1488516_31	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1488516_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1488516_33	UniRef90	UniRef90_UPI00189CE417	phage scaffolding protein	NA
UHGV-1488516_33	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-1488516_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1488516_33	Structural annotation	PF06810	NA	NA
UHGV-1488516_34	PHROG	phrog_909	major head protein	head and packaging
UHGV-1488516_34	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-1488516_34	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-1488516_34	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-1488516_34	Structural annotation	PF02924	NA	NA
UHGV-1488516_35	PHROG	phrog_29	major head protein	head and packaging
UHGV-1488516_35	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-1488516_35	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-1488516_35	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1488516_35	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1488516_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1488516_36	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-1488516_37	PHROG	phrog_3366	NA	unknown function
UHGV-1488516_37	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1488516_37	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1488516_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1488516_38	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-1488516_38	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1488516_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1488516_38	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1488516_39	PHROG	phrog_3266	tail completion	connector
UHGV-1488516_39	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-1488516_39	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1488516_39	Structural annotation	PF12691	NA	NA
UHGV-1488516_40	PHROG	phrog_3099	NA	unknown function
UHGV-1488516_40	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-1488516_40	Structural annotation	TIGR02126	NA	NA
UHGV-1488516_41	PHROG	phrog_11299	NA	unknown function
UHGV-1488516_41	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1488516_41	Structural annotation	PF10666	NA	NA
UHGV-1488516_42	PHROG	phrog_706	NA	unknown function
UHGV-1488516_42	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-1488516_42	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1488516_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1488516_42	Structural annotation	PF06854	NA	NA
UHGV-1488516_43	UniRef90	UniRef90_A0A2N2CRH6	NA	NA
UHGV-1488516_43	eggNOG-mapper	720554.Clocl_3520	cell wall binding repeat	NA
UHGV-1488516_43	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-1488516_43	Structural annotation	PF17118, MF_00612, NF002486, COG3012	NA	NA
UHGV-1488516_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1488516_44	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1488516_44	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-1488516_44	COG	COG1511	NA	NA
UHGV-1488516_44	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1488516_45	PHROG	phrog_1194	NA	unknown function
UHGV-1488516_45	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-1488516_45	Pfam	PF20458	NA	DUF6711
UHGV-1488516_45	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1488516_46	PHROG	phrog_6616	tail protein	tail
UHGV-1488516_46	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-1488516_46	eggNOG-mapper	1232443.BAIA02000078_gene16	NA	NA
UHGV-1488516_46	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-1488516_47	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-1488516_47	Structural annotation	COG4379	NA	NA
UHGV-1488516_49	eggNOG-mapper	1235797.C816_04177	alginic acid biosynthetic process	NA
UHGV-1488516_49	COG	COG1511	NA	NA
UHGV-1488516_50	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1488516_50	Structural annotation	PF21722	NA	NA