UHGV-1488600

Genome information

Genome length 25,442 bps

CDS count 34

Completeness 62.80% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-1488600
vOTU ID	vOTU-035867
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0185031
BioSample	SAMN02334017
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.34
Jumbo phage	No

Genome content
Genome length	25,442 bps
GC content	49.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	95.35%
Average CDS length	714.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1488600_1	UniRef90	UniRef90_UPI001A9B9B76	pentapeptide repeat-containing protein	NA
UHGV-1488600_1	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1488600_1	Structural annotation	PF00805	NA	NA
UHGV-1488600_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1488600_4	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-1488600_4	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-1488600_4	Pfam	PF07374	NA	DUF1492
UHGV-1488600_4	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1488600_4	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1488600_5	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1488600_5	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1488600_5	UniRef90	UniRef90_A0A6N7XHE4	Terminase small subunit	NA
UHGV-1488600_5	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-1488600_5	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1488600_5	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1488600_5	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1488600_6	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1488600_6	UniRef90	UniRef90_A0A8D6UFF5	HNH endonuclease	NA
UHGV-1488600_6	eggNOG-mapper	1610832.A0A0E3GMP6_9CAUD	HNH endonuclease	NA
UHGV-1488600_6	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1488600_6	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1488600_6	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1488600_6	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1488600_6	Structural annotation	PF07453	NA	NA
UHGV-1488600_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1488600_7	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1488600_7	UniRef90	UniRef90_A0A1C5PQJ7	Phage terminase, large subunit, PBSX family	NA
UHGV-1488600_7	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-1488600_7	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1488600_7	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1488600_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1488600_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-1488600_7	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1488600_8	PHROG	phrog_37604	NA	unknown function
UHGV-1488600_8	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-1488600_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-1488600_9	UniRef90	UniRef90_UPI001C0F698D	phage portal protein	NA
UHGV-1488600_9	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1488600_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1488600_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1488600_10	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1488600_10	UniRef90	UniRef90_UPI001C0FAD87	phage head morphogenesis protein	NA
UHGV-1488600_10	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-1488600_10	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1488600_10	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1488600_10	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1488600_10	COG	COG2369	NA	NA
UHGV-1488600_10	Structural annotation	PF15542, PF04233, TIGR01641, COG2369	NA	NA
UHGV-1488600_12	PHROG	phrog_443	holin	lysis
UHGV-1488600_12	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-1488600_12	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-1488600_12	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1488600_12	Structural annotation	PF16945	NA	NA
UHGV-1488600_13	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1488600_13	PHROG	phrog_435	endolysin	lysis
UHGV-1488600_13	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1488600_13	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1488600_13	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1488600_13	Pfam	PF05036	SPOR domain	SPOR
UHGV-1488600_13	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1488600_13	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1488600_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1488600_14	UniRef90	UniRef90_UPI001C0FB34A	phage scaffolding protein	NA
UHGV-1488600_14	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-1488600_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1488600_14	Structural annotation	PF06810	NA	NA
UHGV-1488600_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-1488600_15	UniRef90	UniRef90_UPI001D09539E	N4-gp56 family major capsid protein	NA
UHGV-1488600_15	eggNOG-mapper	1499683.CCFF01000017_gene2147	NA	NA
UHGV-1488600_15	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1488600_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1488600_16	PHROG	phrog_1236	head protein	head and packaging
UHGV-1488600_16	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-1488600_16	Structural annotation	PF05135	NA	NA
UHGV-1488600_17	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-1488600_17	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-1488600_17	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-1488600_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1488600_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1488600_18	UniRef90	UniRef90_UPI00156E66A4	HK97 gp10 family phage protein	NA
UHGV-1488600_18	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-1488600_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1488600_19	PHROG	phrog_957	head protein	head and packaging
UHGV-1488600_19	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-1488600_19	Structural annotation	PF12691	NA	NA
UHGV-1488600_20	PHROG	phrog_885	major tail protein	tail
UHGV-1488600_20	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-1488600_20	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1488600_21	PHROG	phrog_1021	NA	unknown function
UHGV-1488600_21	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-1488600_22	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-1488600_23	PHROG	phrog_23464	NA	unknown function
UHGV-1488600_23	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-1488600_23	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-1488600_23	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1488600_24	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1488600_24	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-1488600_24	eggNOG-mapper	1121334.KB911068_gene2299	Phage tail tape measure protein, TP901 family	NA
UHGV-1488600_24	COG	COG5283	Phage-related tail protein	NA
UHGV-1488600_24	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1488600_25	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1488600_25	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1488600_26	PHROG	phrog_18110	NA	unknown function
UHGV-1488600_26	UniRef90	UniRef90_UPI00085C46C7	phage tail protein	NA
UHGV-1488600_26	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-1488600_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1488600_26	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1488600_26	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1488600_26	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-1488600_27	Structural annotation	PF17642	NA	NA
UHGV-1488600_28	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-1488600_28	eggNOG-mapper	1408437.JNJN01000002_gene1389	NA	NA
UHGV-1488600_29	PHROG	phrog_2295	NA	unknown function
UHGV-1488600_29	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1488600_29	Structural annotation	PF21722	NA	NA
UHGV-1488600_30	eggNOG-mapper	1291050.JAGE01000001_gene436	NA	NA
UHGV-1488600_31	PHROG	phrog_30034	NA	unknown function
UHGV-1488600_31	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-1488600_31	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-1488600_31	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1488600_31	Structural annotation	PF14600	NA	NA
UHGV-1488600_32	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1488600_32	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-1488600_32	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-1488600_32	COG	COG4722	Phage-related protein YomH	NA
UHGV-1488600_32	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1488600_33	PHROG	phrog_3558	tail protein	tail
UHGV-1488600_33	UniRef90	UniRef90_A8SKQ2	Phage minor structural protein, N-terminal domain protein	NA
UHGV-1488600_33	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-1488600_33	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1488600_33	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1488600_33	COG	COG4926	Phage-related protein	NA
UHGV-1488600_33	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-1488600_34	PHROG	phrog_372	tail protein	tail
UHGV-1488600_34	eggNOG-mapper	476272.RUMHYD_01487	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1488600_34	Pfam	PF05895	NA	DUF859
UHGV-1488600_34	COG	COG4675	Phage tail collar domain	NA