UHGV-1488676

Genome information

Genome length 27,635 bps

CDS count 39

Completeness 54.93% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-1488676
vOTU ID	vOTU-023194
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0198088
BioSample	SAMN00691409
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.23
Jumbo phage	No

Genome content
Genome length	27,635 bps
GC content	30.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.93%
Average CDS length	667.08 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1488676_1	PHROG	phrog_1193	hemolysin	other
UHGV-1488676_1	UniRef90	UniRef90_UPI000C06A985	hemolysin XhlA family protein	NA
UHGV-1488676_1	eggNOG-mapper	318464.IO99_03750	Haemolysin XhlA	NA
UHGV-1488676_1	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-1488676_2	UniRef90	UniRef90_UPI0018A9B0B5	collagen-like protein	NA
UHGV-1488676_2	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-1488676_3	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1488676_5	PHROG	phrog_18608	NA	unknown function
UHGV-1488676_5	UniRef90	UniRef90_UPI0018AA8839	pyocin knob domain-containing protein	NA
UHGV-1488676_5	eggNOG-mapper	1280689.AUJC01000003_gene979	NA	NA
UHGV-1488676_6	PHROG	phrog_521	tail protein	tail
UHGV-1488676_6	UniRef90	UniRef90_UPI0018A0144E	NA	NA
UHGV-1488676_6	eggNOG-mapper	742738.HMPREF9460_02532	NA	NA
UHGV-1488676_6	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1488676_6	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1488676_6	Structural annotation	PF10076, PF12571, TIGR02242, COG3778	NA	NA
UHGV-1488676_7	PHROG	phrog_6	baseplate protein	tail
UHGV-1488676_7	UniRef90	UniRef90_UPI000C0805C2	baseplate J/gp47 family protein	NA
UHGV-1488676_7	eggNOG-mapper	12402.Q708L2_9CAUD	Baseplate J-like protein	NA
UHGV-1488676_7	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1488676_7	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1488676_8	PHROG	phrog_120	baseplate protein	tail
UHGV-1488676_8	UniRef90	UniRef90_UPI000C0860BF	NA	NA
UHGV-1488676_8	eggNOG-mapper	12402.Q708L3_9CAUD	lytic transglycosylase activity	NA
UHGV-1488676_8	Pfam	PF10934	NA	DUF2634
UHGV-1488676_8	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1488676_9	PHROG	phrog_579	NA	unknown function
UHGV-1488676_9	UniRef90	UniRef90_UPI0018AC4342	NA	NA
UHGV-1488676_9	eggNOG-mapper	1122919.KB905569_gene2954	NA	NA
UHGV-1488676_9	Pfam	PF10844	NA	DUF2577
UHGV-1488676_9	Structural annotation	PF10844	NA	NA
UHGV-1488676_10	PHROG	phrog_400	tail protein	tail
UHGV-1488676_10	UniRef90	UniRef90_A3DIB3	NA	NA
UHGV-1488676_10	eggNOG-mapper	12402.Q708L5_9CAUD	amidase activity	NA
UHGV-1488676_10	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1488676_11	PHROG	phrog_380	endolysin	lysis
UHGV-1488676_11	eggNOG-mapper	12402.Q708L6_9CAUD	lytic transglycosylase activity	NA
UHGV-1488676_11	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-1488676_12	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1488676_12	UniRef90	UniRef90_UPI000C069D2E	tape measure protein	NA
UHGV-1488676_12	eggNOG-mapper	398512.JQKC01000053_gene2536	tape measure	NA
UHGV-1488676_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1488676_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1488676_12	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1488676_12	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1488676_13	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1488676_13	UniRef90	UniRef90_UPI000C0874F0	XkdN-like protein	NA
UHGV-1488676_13	eggNOG-mapper	1122919.KB905569_gene2950	Phage portal protein	NA
UHGV-1488676_13	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1488676_13	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1488676_14	PHROG	phrog_365	tail protein	tail
UHGV-1488676_14	UniRef90	UniRef90_UPI00189E83A7	phage tail tube protein	NA
UHGV-1488676_14	eggNOG-mapper	697284.ERIC2_c23630	Phage tail tube protein	NA
UHGV-1488676_14	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1488676_14	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1488676_15	PHROG	phrog_279	tail sheath	tail
UHGV-1488676_15	UniRef90	UniRef90_UPI000C0771A6	phage tail sheath family protein	NA
UHGV-1488676_15	eggNOG-mapper	1567014.A0A0A7RTT5_9VIRU	Phage tail sheath protein	NA
UHGV-1488676_15	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1488676_15	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1488676_15	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1488676_15	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1488676_16	PHROG	phrog_525	NA	unknown function
UHGV-1488676_16	UniRef90	UniRef90_A0A7U3YCY4	NA	NA
UHGV-1488676_16	eggNOG-mapper	742740.HMPREF9474_02349	NA	NA
UHGV-1488676_16	Pfam	PF20765	NA	DUF6838
UHGV-1488676_16	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1488676_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1488676_17	UniRef90	UniRef90_UPI00189EF221	HK97 gp10 family phage protein	NA
UHGV-1488676_17	eggNOG-mapper	743719.PaelaDRAFT_2404	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1488676_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1488676_17	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1488676_18	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1488676_18	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1488676_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1488676_19	UniRef90	UniRef90_UPI0018A03887	phage head-tail connector protein	NA
UHGV-1488676_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1488676_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1488676_21	UniRef90	UniRef90_UPI0018A03EFB	phage major capsid protein	NA
UHGV-1488676_21	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-1488676_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1488676_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1488676_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1488676_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1488676_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1488676_22	UniRef90	UniRef90_UPI0018A9CF86	phage scaffolding protein	NA
UHGV-1488676_22	eggNOG-mapper	1567014.A0A0A7S0J5_9VIRU	Phage minor structural protein GP20	NA
UHGV-1488676_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1488676_22	Structural annotation	PF06810	NA	NA
UHGV-1488676_24	PHROG	phrog_3675	NA	unknown function
UHGV-1488676_24	UniRef90	UniRef90_A0A1T4YDH6	YjcQ protein	NA
UHGV-1488676_24	eggNOG-mapper	1122173.AXVL01000018_gene435	YjcQ protein	NA
UHGV-1488676_24	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1488676_24	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1488676_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1488676_26	UniRef90	UniRef90_UPI0018AB9839	minor capsid protein	NA
UHGV-1488676_26	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-1488676_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1488676_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1488676_26	COG	COG2369	NA	NA
UHGV-1488676_26	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1488676_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-1488676_27	UniRef90	UniRef90_UPI0018A0910C	phage portal protein	NA
UHGV-1488676_27	eggNOG-mapper	1522092.A0A090DBP3_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1488676_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1488676_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1488676_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1488676_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1488676_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1488676_28	UniRef90	UniRef90_A0A1B8RSV7	Terminase	NA
UHGV-1488676_28	eggNOG-mapper	1280689.AUJC01000003_gene962	Phage terminase, large subunit, PBSX family	NA
UHGV-1488676_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1488676_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1488676_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1488676_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1488676_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1488676_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1488676_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1488676_29	UniRef90	UniRef90_UPI0011CAB70D	terminase small subunit	NA
UHGV-1488676_29	eggNOG-mapper	1294142.CINTURNW_1022	Terminase Small Subunit	NA
UHGV-1488676_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1488676_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1488676_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1488676_32	UniRef90	UniRef90_UPI001CC81EC0	NA	NA
UHGV-1488676_32	eggNOG-mapper	760568.Desku_1806	NA	NA
UHGV-1488676_33	UniRef90	UniRef90_A0A1C6JMI4	Alternative sigma factor RpoH	NA
UHGV-1488676_33	eggNOG-mapper	1280689.AUJC01000003_gene954	NA	NA
UHGV-1488676_33	Structural annotation	PF04545, MF_00683, NF008895	NA	NA
UHGV-1488676_34	PHROG	phrog_5200	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1488676_34	UniRef90	UniRef90_UPI0018A10DB8	HNH endonuclease	NA
UHGV-1488676_34	eggNOG-mapper	755178.Cyan10605_1864	HNH nucleases	NA
UHGV-1488676_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1488676_35	Structural annotation	NF009256	NA	NA
UHGV-1488676_37	Structural annotation	PF20111, TIGR00686	NA	NA
UHGV-1488676_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1488676_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1488676_38	UniRef90	UniRef90_UPI00189EF0F3	single-stranded DNA-binding protein	NA
UHGV-1488676_38	eggNOG-mapper	1414720.CBYM010000010_gene3150	Single-stranded DNA-binding protein	NA
UHGV-1488676_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1488676_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1488676_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1488676_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1488676_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1488676_39	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1488676_39	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA