UHGV-1488759

Genome information

Genome length 38,324 bps

CDS count 48

Completeness 76.34% (medium-quality)

geNomad score 0.9637

Prediction confidence Confident

Genome information
Genome ID	UHGV-1488759
vOTU ID	vOTU-035869
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0259296
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9637
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.63
Jumbo phage	No

Genome content
Genome length	38,324 bps
GC content	51.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.57%
Average CDS length	735.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1488759_1	KOfam	K03609	minD; septum site-determining protein MinD	NA
UHGV-1488759_1	UniRef90	UniRef90_A0A380N5M3	Cell division inhibitor MinD	NA
UHGV-1488759_1	eggNOG-mapper	1128111.HMPREF0870_01038	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-1488759_1	COG	COG2894	Septum site-determining ATPase MinD	NA
UHGV-1488759_7	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1488759_7	UniRef90	UniRef90_A0A2T5L7K2	ERF superfamily protein	NA
UHGV-1488759_7	eggNOG-mapper	1622193.A0A0E3T692_9CAUD	ERF superfamily	NA
UHGV-1488759_7	Pfam	PF04404	ERF superfamily	ERF
UHGV-1488759_8	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1488759_8	UniRef90	UniRef90_UPI0015BECCC3	helix-turn-helix domain-containing protein	NA
UHGV-1488759_8	eggNOG-mapper	1348662.CARG_02500	Transcriptional regulator	NA
UHGV-1488759_8	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-1488759_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1488759_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1488759_10	UniRef90	UniRef90_A0A496MUW9	Single-stranded DNA-binding protein	NA
UHGV-1488759_10	eggNOG-mapper	1125779.HMPREF1219_00144	Single-strand binding protein family	NA
UHGV-1488759_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1488759_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1488759_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1488759_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1488759_10	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1488759_11	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-1488759_11	PHROG	phrog_22	thioredoxin domain	DNA, RNA and nucleotide metabolism
UHGV-1488759_11	UniRef90	UniRef90_A0A496MV44	Glutaredoxin domain-containing protein	NA
UHGV-1488759_11	eggNOG-mapper	1437610.BREU_2030	Glutaredoxin	NA
UHGV-1488759_11	Pfam	PF00462	Glutaredoxin	Glutaredoxin
UHGV-1488759_11	COG	COG0695	Glutaredoxin	NA
UHGV-1488759_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1488759_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1488759_12	UniRef90	UniRef90_A0A496MXG6	DNA helicase	NA
UHGV-1488759_12	eggNOG-mapper	504474.cu1984	Participates in initiation and elongation during chromosome replication	NA
UHGV-1488759_12	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1488759_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1488759_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-1488759_12	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1488759_14	PHROG	phrog_284	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1488759_14	UniRef90	UniRef90_A0A364VE55	Metallophos domain-containing protein	NA
UHGV-1488759_14	eggNOG-mapper	247156.NFA_39310	NA	NA
UHGV-1488759_14	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-1488759_15	UniRef90	UniRef90_A0A7G5FIP1	NA	NA
UHGV-1488759_15	eggNOG-mapper	863239.AFIZ01000022_gene2477	NA	NA
UHGV-1488759_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1488759_16	PHROG	phrog_3055	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1488759_16	UniRef90	UniRef90_A0A496MUZ6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1488759_16	eggNOG-mapper	1121370.AQUY01000001_gene998	Endodeoxyribonuclease RusA	NA
UHGV-1488759_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1488759_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1488759_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1488759_18	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1488759_18	UniRef90	UniRef90_A0A1H0U463	AAA domain-containing protein	NA
UHGV-1488759_18	eggNOG-mapper	1463921.JODF01000003_gene2346	HNH endonuclease	NA
UHGV-1488759_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1488759_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1488759_20	UniRef90	UniRef90_UPI0008A58C31	terminase large subunit	NA
UHGV-1488759_20	eggNOG-mapper	1077144.AGFF01000024_gene246	Terminase	NA
UHGV-1488759_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1488759_20	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-1488759_21	PHROG	phrog_113	portal protein	head and packaging
UHGV-1488759_21	UniRef90	UniRef90_UPI00124BFCD7	NA	NA
UHGV-1488759_21	eggNOG-mapper	1125779.HMPREF1219_00155	Mu-like prophage protein gp29	NA
UHGV-1488759_21	COG	COG4383	NA	NA
UHGV-1488759_21	Structural annotation	PF06074, MF_04135, TIGR01537, COG4383	NA	NA
UHGV-1488759_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1488759_22	PHROG	phrog_2976	head maturation protease	head and packaging
UHGV-1488759_22	UniRef90	UniRef90_A0A4U6QN38	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1488759_22	eggNOG-mapper	675635.Psed_5788	Serine dehydrogenase proteinase	NA
UHGV-1488759_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1488759_22	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-1488759_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1488759_22	Structural annotation	PF00574, MF_00444, NF009205, COG0740	NA	NA
UHGV-1488759_23	PHROG	phrog_20430	NA	unknown function
UHGV-1488759_23	eggNOG-mapper	1121356.AQUW01000015_gene2176	NA	NA
UHGV-1488759_24	PHROG	phrog_1650	major head protein	head and packaging
UHGV-1488759_24	UniRef90	UniRef90_A0A1B3AYV7	Major capsid protein	NA
UHGV-1488759_24	eggNOG-mapper	1121356.AQUW01000015_gene2177	NA	NA
UHGV-1488759_24	Structural annotation	PF05065, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1488759_25	PHROG	phrog_2322	head-tail connector protein	connector
UHGV-1488759_25	eggNOG-mapper	196164.23492683	NA	NA
UHGV-1488759_26	UniRef90	UniRef90_UPI000EF9FE42	Gp19/Gp15/Gp42 family protein	NA
UHGV-1488759_26	eggNOG-mapper	1125779.HMPREF1219_00160	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1488759_26	Pfam	PF09355	NA	Phage_Gp19
UHGV-1488759_26	Structural annotation	PF09355	NA	NA
UHGV-1488759_27	eggNOG-mapper	1125779.HMPREF1219_00161	NA	NA
UHGV-1488759_28	PHROG	phrog_8079	neck protein	connector
UHGV-1488759_28	eggNOG-mapper	1121370.AQUY01000001_gene982	NA	NA
UHGV-1488759_29	eggNOG-mapper	1125779.HMPREF1219_00163	NA	NA
UHGV-1488759_30	PHROG	phrog_10909	major tail protein	tail
UHGV-1488759_30	eggNOG-mapper	945712.CULC22_01170	NA	NA
UHGV-1488759_32	PHROG	phrog_24583	NA	unknown function
UHGV-1488759_32	UniRef90	UniRef90_A0A6I8MBJ8	Cell envelope integrity protein TolA	NA
UHGV-1488759_32	eggNOG-mapper	945712.CULC22_01168	NA	NA
UHGV-1488759_33	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1488759_33	PHROG	phrog_8927	tail length tape measure protein	tail
UHGV-1488759_33	UniRef90	UniRef90_A0A496MV64	Phage tail tape measure protein	NA
UHGV-1488759_33	eggNOG-mapper	1121356.AQUW01000011_gene788	Phage tail tape measure protein, TP901 family	NA
UHGV-1488759_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1488759_33	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1488759_33	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1488759_36	PHROG	phrog_16996	NA	unknown function
UHGV-1488759_36	Structural annotation	PF14594, TIGR02126, COG4379	NA	NA
UHGV-1488759_37	PHROG	phrog_20692	NA	unknown function
UHGV-1488759_37	eggNOG-mapper	945712.CULC22_01935	NA	NA
UHGV-1488759_38	PHROG	phrog_700	endolysin	lysis
UHGV-1488759_38	UniRef90	UniRef90_A0A496MV36	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1488759_38	eggNOG-mapper	1077144.AGFF01000007_gene2044	NA	NA
UHGV-1488759_38	Pfam	PF08924	Rv2525c-like, glycoside hydrolase-like domain	Rv2525c_GlyHyd-like
UHGV-1488759_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1488759_38	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1488759_38	Structural annotation	PF08924, PF01510, MF_04111, MF_00606, NF008758, TIGR01361, COG3023, COG2876	NA	NA
UHGV-1488759_39	PHROG	phrog_3428	holin	lysis
UHGV-1488759_39	UniRef90	UniRef90_A0A6M3SWT3	Holin	NA
UHGV-1488759_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1488759_41	UniRef90	UniRef90_A0A496MWK3	YqaJ domain-containing protein	NA
UHGV-1488759_41	eggNOG-mapper	1121924.ATWH01000012_gene1168	YqaJ-like viral recombinase domain	NA
UHGV-1488759_41	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ