UHGV-1489635

Genome information

Genome length 38,310 bps

CDS count 54

Completeness 90.23% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-1489635
vOTU ID	vOTU-063674
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0259225
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	74.26
Jumbo phage	No

Genome content
Genome length	38,310 bps
GC content	38.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.23%
Average CDS length	657.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1489635_1	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1489635_1	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1489635_1	UniRef90	UniRef90_A0A096AMA3	Recombinase RecT	NA
UHGV-1489635_1	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-1489635_1	Pfam	PF03837	RecT family	RecT
UHGV-1489635_1	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1489635_1	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1489635_1	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1489635_2	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1489635_2	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1489635_2	UniRef90	UniRef90_X8H6U8	Antirepressor protein KilAC domain protein	NA
UHGV-1489635_2	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-1489635_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1489635_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1489635_2	COG	COG3617	Prophage antirepressor	NA
UHGV-1489635_2	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1489635_3	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1489635_3	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1489635_3	UniRef90	UniRef90_A0A096AL19	AAA_23 domain-containing protein	NA
UHGV-1489635_3	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-1489635_3	Pfam	PF13476	AAA domain	AAA_23
UHGV-1489635_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1489635_3	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1489635_4	PHROG	phrog_16315	NA	unknown function
UHGV-1489635_4	UniRef90	UniRef90_UPI00040F6C65	PcfJ domain-containing protein	NA
UHGV-1489635_4	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-1489635_4	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1489635_4	Structural annotation	PF14284	NA	NA
UHGV-1489635_5	PHROG	phrog_29844	NA	unknown function
UHGV-1489635_6	PHROG	phrog_35266	NA	unknown function
UHGV-1489635_6	UniRef90	UniRef90_UPI001A614D00	choline-binding protein A	NA
UHGV-1489635_8	Structural annotation	NF041909	NA	NA
UHGV-1489635_10	UniRef90	UniRef90_X8H976	DNA-binding helix-turn-helix protein	NA
UHGV-1489635_10	eggNOG-mapper	546273.VEIDISOL_00695	Helix-turn-helix domain	NA
UHGV-1489635_10	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1489635_10	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-1489635_11	PHROG	phrog_21028	NA	unknown function
UHGV-1489635_11	eggNOG-mapper	526218.Sterm_0826	NA	NA
UHGV-1489635_11	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-1489635_13	PHROG	phrog_6297	NA	unknown function
UHGV-1489635_13	UniRef90	UniRef90_D6KLD3	Hypoth_Ymh domain-containing protein	NA
UHGV-1489635_13	eggNOG-mapper	875454.BAEW01000002_gene502	NA	NA
UHGV-1489635_13	Pfam	PF09509	NA	Hypoth_Ymh
UHGV-1489635_13	NCBIFam	TIGR02391.1	TIGR02391 family protein	NA
UHGV-1489635_13	Structural annotation	PF09509, TIGR02391	NA	NA
UHGV-1489635_14	PHROG	phrog_1090	NA	unknown function
UHGV-1489635_14	UniRef90	UniRef90_A0A4U9YD42	CRISPR associated protein Cas2	NA
UHGV-1489635_14	eggNOG-mapper	290402.Cbei_4995	NA	NA
UHGV-1489635_14	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA
UHGV-1489635_16	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1489635_16	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1489635_16	UniRef90	UniRef90_UPI0018AA0616	helix-turn-helix transcriptional regulator	NA
UHGV-1489635_16	eggNOG-mapper	888060.HMPREF9081_1958	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1489635_16	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1489635_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1489635_16	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1489635_17	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1489635_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1489635_17	UniRef90	UniRef90_UPI00138A0B7C	helix-turn-helix domain-containing protein	NA
UHGV-1489635_17	eggNOG-mapper	546273.VEIDISOL_00692	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1489635_17	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1489635_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1489635_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1489635_17	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1489635_18	PHROG	phrog_20936	NA	unknown function
UHGV-1489635_18	UniRef90	UniRef90_A0A134BXK6	Peptidase_M78 domain-containing protein	NA
UHGV-1489635_18	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1489635_18	Structural annotation	PF06114	NA	NA
UHGV-1489635_19	eggNOG-mapper	883156.HMPREF9282_01295	NA	NA
UHGV-1489635_19	Structural annotation	PF16747	NA	NA
UHGV-1489635_20	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1489635_20	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-1489635_20	UniRef90	UniRef90_UPI001960DD2F	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-1489635_20	eggNOG-mapper	1273103.NM10_02422	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-1489635_20	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1489635_20	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1489635_20	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1489635_21	KOfam	K14059	int; integrase	NA
UHGV-1489635_21	PHROG	phrog_1	integrase	integration and excision
UHGV-1489635_21	UniRef90	UniRef90_D6KLC6	Putative site-specific recombinase, phage integrase family	NA
UHGV-1489635_21	eggNOG-mapper	546273.VEIDISOL_00689	Belongs to the 'phage' integrase family	NA
UHGV-1489635_21	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1489635_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1489635_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1489635_21	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1489635_22	PHROG	phrog_18860	NA	unknown function
UHGV-1489635_23	PHROG	phrog_5867	endolysin	lysis
UHGV-1489635_23	UniRef90	UniRef90_A0A496P7H7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1489635_23	eggNOG-mapper	1123288.SOV_2c01960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1489635_23	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1489635_23	Structural annotation	MF_04111	NA	NA
UHGV-1489635_24	PHROG	phrog_27828	NA	unknown function
UHGV-1489635_24	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-1489635_24	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-1489635_25	PHROG	phrog_8369	hol-like chemotaxis	other
UHGV-1489635_25	eggNOG-mapper	1401067.HMPREF0872_03365	NA	NA
UHGV-1489635_27	Structural annotation	PF21611	NA	NA
UHGV-1489635_28	KOfam	K14059	int; integrase	NA
UHGV-1489635_28	PHROG	phrog_1	integrase	integration and excision
UHGV-1489635_28	UniRef90	UniRef90_D6KLI0	XerC/D integrase-recombinase protein (XerC/D)	NA
UHGV-1489635_28	eggNOG-mapper	546273.VEIDISOL_00732	Belongs to the 'phage' integrase family	NA
UHGV-1489635_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1489635_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1489635_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1489635_28	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1489635_29	PHROG	phrog_7037	tail fiber protein	tail
UHGV-1489635_29	UniRef90	UniRef90_UPI001D0A4391	phage tail protein	NA
UHGV-1489635_29	eggNOG-mapper	1401067.HMPREF0872_00205	tail collar domain protein	NA
UHGV-1489635_29	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-1489635_29	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1489635_29	Structural annotation	PF12571	NA	NA
UHGV-1489635_30	PHROG	phrog_521	tail protein	tail
UHGV-1489635_30	UniRef90	UniRef90_UPI000F8C30C1	NA	NA
UHGV-1489635_30	eggNOG-mapper	883156.HMPREF9282_00966	NA	NA
UHGV-1489635_30	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1489635_30	COG	COG3778	NA	NA
UHGV-1489635_30	Structural annotation	PF10076, COG3778	NA	NA
UHGV-1489635_31	PHROG	phrog_6	baseplate protein	tail
UHGV-1489635_31	UniRef90	UniRef90_UPI000F8C44B3	baseplate J/gp47 family protein	NA
UHGV-1489635_31	eggNOG-mapper	1401067.HMPREF0872_00215	Baseplate J-like protein	NA
UHGV-1489635_31	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1489635_31	COG	COG3299	NA	NA
UHGV-1489635_31	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1489635_32	PHROG	phrog_120	baseplate protein	tail
UHGV-1489635_32	UniRef90	UniRef90_UPI000F8F6B72	NA	NA
UHGV-1489635_32	eggNOG-mapper	1401067.HMPREF0872_00220	NA	NA
UHGV-1489635_32	Pfam	PF10934	NA	DUF2634
UHGV-1489635_32	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1489635_33	PHROG	phrog_579	NA	unknown function
UHGV-1489635_33	UniRef90	UniRef90_UPI001F493DE7	NA	NA
UHGV-1489635_33	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-1489635_33	Pfam	PF10844	NA	DUF2577
UHGV-1489635_33	Structural annotation	PF10844	NA	NA
UHGV-1489635_34	PHROG	phrog_400	tail protein	tail
UHGV-1489635_34	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-1489635_34	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-1489635_34	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1489635_34	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1489635_35	PHROG	phrog_380	endolysin	lysis
UHGV-1489635_35	UniRef90	UniRef90_A0A7C6L055	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1489635_35	eggNOG-mapper	1401067.HMPREF0872_00235	LysM domain	NA
UHGV-1489635_35	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1489635_35	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-1489635_36	PHROG	phrog_16692	NA	unknown function
UHGV-1489635_36	UniRef90	UniRef90_UPI000F8EDABE	phage tail tape measure protein	NA
UHGV-1489635_36	eggNOG-mapper	1111454.HMPREF1250_0194	Phage-related minor tail protein	NA
UHGV-1489635_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1489635_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1489635_36	COG	COG5283	Phage-related tail protein	NA
UHGV-1489635_36	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-1489635_37	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-1489635_37	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-1489635_37	eggNOG-mapper	1401067.HMPREF0872_00250	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1489635_37	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1489635_37	Structural annotation	PF08890	NA	NA
UHGV-1489635_38	PHROG	phrog_365	tail protein	tail
UHGV-1489635_38	UniRef90	UniRef90_UPI000F8D6050	phage tail tube protein	NA
UHGV-1489635_38	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-1489635_38	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1489635_38	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1489635_39	PHROG	phrog_1480	tail sheath	tail
UHGV-1489635_39	UniRef90	UniRef90_UPI000F8F0774	phage tail sheath protein	NA
UHGV-1489635_39	eggNOG-mapper	1401067.HMPREF0872_00260	Phage tail sheath C-terminal domain	NA
UHGV-1489635_39	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1489635_39	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1489635_40	PHROG	phrog_525	NA	unknown function
UHGV-1489635_40	eggNOG-mapper	1401067.HMPREF0872_00265	NA	NA
UHGV-1489635_40	Pfam	PF20765	NA	DUF6838
UHGV-1489635_40	Structural annotation	PF20765	NA	NA
UHGV-1489635_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1489635_41	UniRef90	UniRef90_UPI000F8E7B0D	HK97 gp10 family phage protein	NA
UHGV-1489635_41	eggNOG-mapper	1401067.HMPREF0872_00270	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1489635_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1489635_41	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1489635_42	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1489635_42	UniRef90	UniRef90_A0A072Y2Q6	NA	NA
UHGV-1489635_42	eggNOG-mapper	1401067.HMPREF0872_00275	NA	NA
UHGV-1489635_42	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1489635_43	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1489635_43	eggNOG-mapper	1401067.HMPREF0872_00280	NA	NA
UHGV-1489635_45	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-1489635_45	UniRef90	UniRef90_UPI000F8DBCED	minor capsid protein	NA
UHGV-1489635_45	eggNOG-mapper	1111454.HMPREF1250_0186	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1489635_45	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1489635_45	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1489635_45	COG	COG2369	NA	NA
UHGV-1489635_45	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1489635_46	PHROG	phrog_247	major head protein	head and packaging
UHGV-1489635_46	UniRef90	UniRef90_UPI000F8F1848	major capsid protein	NA
UHGV-1489635_46	eggNOG-mapper	1401067.HMPREF0872_00295	NA	NA
UHGV-1489635_46	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1489635_46	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-1489635_47	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1489635_47	UniRef90	UniRef90_A0A096ALW4	Phage minor structural protein GP20	NA
UHGV-1489635_47	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-1489635_47	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1489635_47	Structural annotation	PF06810	NA	NA
UHGV-1489635_48	PHROG	phrog_64	portal protein	head and packaging
UHGV-1489635_48	UniRef90	UniRef90_UPI000F8F2344	phage portal protein	NA
UHGV-1489635_48	eggNOG-mapper	1401067.HMPREF0872_00305	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1489635_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1489635_48	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1489635_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1489635_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1489635_49	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1489635_49	UniRef90	UniRef90_UPI00197E1B04	PBSX family phage terminase large subunit	NA
UHGV-1489635_49	eggNOG-mapper	546273.VEIDISOL_00710	Phage terminase, large subunit	NA
UHGV-1489635_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1489635_49	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1489635_49	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1489635_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-1489635_49	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-1489635_49	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1489635_50	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1489635_50	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1489635_50	UniRef90	UniRef90_X8H8N9	Terminase small subunit	NA
UHGV-1489635_50	eggNOG-mapper	546273.VEIDISOL_00709	terminase, small subunit	NA
UHGV-1489635_50	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1489635_50	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1489635_50	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1489635_51	PHROG	phrog_33034	NA	unknown function
UHGV-1489635_53	Pfam	PF19865	NA	DUF6338
UHGV-1489635_54	PHROG	phrog_1558	NA	unknown function
UHGV-1489635_54	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA