UHGV-1489652

Genome information

Genome length 55,836 bps

CDS count 71

Completeness 98.13% (high-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-1489652
vOTU ID	vOTU-081045
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0323336
BioSample	SAMEA2738065
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.83
Jumbo phage	No

Genome content
Genome length	55,836 bps
GC content	36.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	95.91%
Average CDS length	759.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1489652_1	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1489652_1	UniRef90	UniRef90_A0A1C5MZZ8	Transposase and inactivated derivatives, IS30 family	NA
UHGV-1489652_1	eggNOG-mapper	742740.HMPREF9474_02278	NA	NA
UHGV-1489652_1	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1489652_1	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-1489652_1	Structural annotation	PF05183	NA	NA
UHGV-1489652_2	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1489652_2	UniRef90	UniRef90_A0A222ZJN4	Exonuclease	NA
UHGV-1489652_2	eggNOG-mapper	478749.BRYFOR_08535	NA	NA
UHGV-1489652_2	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1489652_3	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-1489652_3	Structural annotation	PF01870, COG1591	NA	NA
UHGV-1489652_4	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1489652_4	UniRef90	UniRef90_A0A2U8UIA8	DNA helicase	NA
UHGV-1489652_4	eggNOG-mapper	1476888.X4YWQ6_9CAUD	helicase activity	NA
UHGV-1489652_4	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-1489652_5	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1489652_5	eggNOG-mapper	411460.RUMTOR_01384	NA	NA
UHGV-1489652_6	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-1489652_6	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1489652_6	UniRef90	UniRef90_A0A6G5Y767	SF3 helicase domain-containing protein	NA
UHGV-1489652_6	eggNOG-mapper	475178.B2BTL9_9CAUD	nucleic acid binding	NA
UHGV-1489652_6	Pfam	PF19263	NA	DUF5906
UHGV-1489652_6	Structural annotation	PF00136, PF09250, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-1489652_8	PHROG	phrog_998	endolysin	lysis
UHGV-1489652_8	UniRef90	UniRef90_O03979	Lysin	NA
UHGV-1489652_8	eggNOG-mapper	59241.E7DNC3_BPDP1	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1489652_8	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1489652_8	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-1489652_8	Structural annotation	PF19127, PF05382, TIGR04035, NF008096, COG5263, COG3942	NA	NA
UHGV-1489652_11	PHROG	phrog_1485	NA	unknown function
UHGV-1489652_11	eggNOG-mapper	1121871.AUAT01000002_gene1368	NA	NA
UHGV-1489652_11	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-1489652_13	PHROG	phrog_2164	NA	unknown function
UHGV-1489652_21	PHROG	phrog_2152	NA	unknown function
UHGV-1489652_21	Pfam	PF19880	NA	DUF6353
UHGV-1489652_21	Structural annotation	PF19880, NF010306	NA	NA
UHGV-1489652_25	PHROG	phrog_4079	NA	unknown function
UHGV-1489652_25	eggNOG-mapper	428125.CLOLEP_01365	NA	NA
UHGV-1489652_43	PHROG	phrog_1494	NA	unknown function
UHGV-1489652_44	Structural annotation	PF17376	NA	NA
UHGV-1489652_48	PHROG	phrog_32123	NA	unknown function
UHGV-1489652_48	eggNOG-mapper	997830.HMPREF1124_0614	Collagen triple helix repeat (20 copies)	NA
UHGV-1489652_48	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1489652_49	PHROG	phrog_1554	NA	unknown function
UHGV-1489652_49	UniRef90	UniRef90_A0A139Q9H9	NA	NA
UHGV-1489652_49	eggNOG-mapper	1035189.HMPREF9954_1920	NA	NA
UHGV-1489652_49	Structural annotation	PF07104	NA	NA
UHGV-1489652_51	PHROG	phrog_1330	tail protein	tail
UHGV-1489652_51	eggNOG-mapper	1158614.I592_02417	Prophage endopeptidase tail	NA
UHGV-1489652_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1489652_51	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1489652_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1489652_51	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1489652_51	Structural annotation	PF14594, PF00629, PF10528, TIGR01665, NF033675, NF038393, COG4926	NA	NA
UHGV-1489652_52	UniRef90	UniRef90_A0A1M5Z1G4	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-1489652_52	eggNOG-mapper	1408422.JHYF01000021_gene970	tail component	NA
UHGV-1489652_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-1489652_52	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1489652_53	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-1489652_53	eggNOG-mapper	742733.HMPREF9469_05020	phage tail tape measure protein	NA
UHGV-1489652_53	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1489652_53	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1489652_53	COG	COG5412	Phage-related protein	NA
UHGV-1489652_54	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1489652_54	UniRef90	UniRef90_UPI000659DD5E	HK97 gp10 family phage protein	NA
UHGV-1489652_54	eggNOG-mapper	665956.HMPREF1032_00685	NA	NA
UHGV-1489652_54	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-1489652_56	PHROG	phrog_4338	NA	unknown function
UHGV-1489652_56	eggNOG-mapper	475178.B2BTI0_9CAUD	NA	NA
UHGV-1489652_57	PHROG	phrog_4282	NA	unknown function
UHGV-1489652_57	UniRef90	UniRef90_D4P7T3	Gp065	NA
UHGV-1489652_57	eggNOG-mapper	742733.HMPREF9469_05024	NA	NA
UHGV-1489652_58	PHROG	phrog_2645	major tail protein	tail
UHGV-1489652_58	UniRef90	UniRef90_A0A7X7CG90	Ig-like domain-containing protein	NA
UHGV-1489652_58	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-1489652_58	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1489652_59	UniRef90	UniRef90_A0A5J6D7U9	Tail terminator	NA
UHGV-1489652_59	eggNOG-mapper	478749.BRYFOR_08519	NA	NA
UHGV-1489652_59	Structural annotation	PF20765	NA	NA
UHGV-1489652_60	PHROG	phrog_4270	NA	unknown function
UHGV-1489652_60	eggNOG-mapper	411460.RUMTOR_01344	NA	NA
UHGV-1489652_60	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1489652_61	KOfam	K06904	NA	NA
UHGV-1489652_61	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-1489652_61	UniRef90	UniRef90_A0A6G5Y7H0	BIG2 domain-containing protein	NA
UHGV-1489652_61	eggNOG-mapper	1476888.X4YUP1_9CAUD	peptidase activity	NA
UHGV-1489652_61	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1489652_61	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1489652_61	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-1489652_62	PHROG	phrog_12	portal protein	head and packaging
UHGV-1489652_62	UniRef90	UniRef90_A0A1C5N1E3	Phage portal protein, HK97 family	NA
UHGV-1489652_62	eggNOG-mapper	428125.CLOLEP_01411	Phage portal protein	NA
UHGV-1489652_62	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1489652_62	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1489652_63	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1489652_63	UniRef90	UniRef90_A0A5C7M263	Terminase	NA
UHGV-1489652_63	eggNOG-mapper	691965.D4P7C5_9CAUD	Phage Terminase	NA
UHGV-1489652_63	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1489652_63	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1489652_63	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1489652_64	PHROG	phrog_7021	NA	unknown function
UHGV-1489652_65	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-1489652_66	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1489652_66	UniRef90	UniRef90_X4YEE5	Homing endonuclease	NA
UHGV-1489652_66	eggNOG-mapper	475178.B2BTG9_9CAUD	NA	NA
UHGV-1489652_67	PHROG	phrog_4259	NA	unknown function
UHGV-1489652_67	eggNOG-mapper	742740.HMPREF9474_02276	NA	NA
UHGV-1489652_68	PHROG	phrog_6918	holin	lysis
UHGV-1489652_68	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1489652_68	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1489652_70	PHROG	phrog_4303	NA	unknown function
UHGV-1489652_70	eggNOG-mapper	475178.B2BTP0_9CAUD	NA	NA
UHGV-1489652_71	eggNOG-mapper	546275.FUSPEROL_01194	precorrin-6y C5,15-methyltransferase	NA
UHGV-1489652_71	COG	COG2241	Precorrin-6B methylase 1	NA