UHGV-1489669

Genome information

Genome length 39,215 bps

CDS count 50

Completeness 94.04% (high-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-1489669
vOTU ID	vOTU-065707
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0264340
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.04% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.02
Jumbo phage	No

Genome content
Genome length	39,215 bps
GC content	51.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	96.17%
Average CDS length	757.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1489669_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1489669_2	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1489669_2	UniRef90	UniRef90_UPI0006875436	phage terminase large subunit	NA
UHGV-1489669_2	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1489669_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1489669_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-1489669_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1489669_3	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1489669_11	Pfam	PF04448	NA	DUF551
UHGV-1489669_15	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-1489669_16	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1489669_16	UniRef90	UniRef90_UPI0005D17CFF	NA	NA
UHGV-1489669_16	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-1489669_16	Pfam	PF06356	NA	DUF1064
UHGV-1489669_16	Structural annotation	PF06356	NA	NA
UHGV-1489669_18	PHROG	phrog_9804	NA	unknown function
UHGV-1489669_18	UniRef90	UniRef90_UPI00189C0C42	replicative helicase loader/inhibitor	NA
UHGV-1489669_18	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-1489669_18	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1489669_19	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1489669_19	UniRef90	UniRef90_A0A6A4UXR4	Phage replication initiation	NA
UHGV-1489669_19	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-1489669_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1489669_19	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1489669_20	PHROG	phrog_4292	NA	unknown function
UHGV-1489669_20	eggNOG-mapper	411473.RUMCAL_01910	NA	NA
UHGV-1489669_21	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1489669_21	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1489669_21	UniRef90	UniRef90_A0A3D3Y5Q7	dUTP diphosphatase	NA
UHGV-1489669_21	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-1489669_21	Pfam	PF00692	dUTPase	dUTPase
UHGV-1489669_21	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1489669_21	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1489669_21	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1489669_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1489669_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1489669_22	UniRef90	UniRef90_A7VPP2	Single-stranded DNA-binding protein	NA
UHGV-1489669_22	eggNOG-mapper	428125.CLOLEP_00518	Single-stranded DNA-binding protein	NA
UHGV-1489669_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1489669_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1489669_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1489669_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1489669_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1489669_23	PHROG	phrog_4973	NA	unknown function
UHGV-1489669_23	UniRef90	UniRef90_A0A1W1YSW9	Helix-turn-helix domain-containing protein	NA
UHGV-1489669_23	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1489669_23	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-1489669_24	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1489669_24	UniRef90	UniRef90_UPI001D05CADB	HNH endonuclease	NA
UHGV-1489669_24	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-1489669_24	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-1489669_25	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1489669_25	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1489669_25	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1489669_25	Structural annotation	PF05772	NA	NA
UHGV-1489669_26	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1489669_26	eggNOG-mapper	1238184.CM001792_gene2549	NA	NA
UHGV-1489669_26	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1489669_26	Structural annotation	PF12684, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-1489669_27	PHROG	phrog_8492	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1489669_27	UniRef90	UniRef90_A0A858BRQ4	NA	NA
UHGV-1489669_27	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-1489669_27	Pfam	PF06378	NA	DUF1071
UHGV-1489669_27	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-1489669_31	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-1489669_31	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1489669_33	UniRef90	UniRef90_R5J287	Conserved domain protein	NA
UHGV-1489669_33	eggNOG-mapper	596329.HMPREF0631_1345	NA	NA
UHGV-1489669_33	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1489669_33	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-1489669_34	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1489669_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1489669_34	UniRef90	UniRef90_UPI0013796B8E	helix-turn-helix domain-containing protein	NA
UHGV-1489669_34	eggNOG-mapper	457421.CBFG_03225	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1489669_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1489669_34	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1489669_34	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-1489669_38	KOfam	K14059	int; integrase	NA
UHGV-1489669_38	PHROG	phrog_1	integrase	integration and excision
UHGV-1489669_38	UniRef90	UniRef90_UPI000F051A1D	tyrosine-type recombinase/integrase	NA
UHGV-1489669_38	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-1489669_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1489669_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1489669_38	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1489669_39	PHROG	phrog_881	holin	lysis
UHGV-1489669_39	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-1489669_39	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-1489669_39	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1489669_39	Structural annotation	PF16938	NA	NA
UHGV-1489669_40	PHROG	phrog_9829	NA	unknown function
UHGV-1489669_41	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1489669_41	PHROG	phrog_435	endolysin	lysis
UHGV-1489669_41	UniRef90	UniRef90_UPI0019CF7CF8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1489669_41	eggNOG-mapper	665950.HMPREF1025_02673	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1489669_41	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1489669_41	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1489669_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1489669_41	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-1489669_42	Pfam	PF18902	NA	DUF5658
UHGV-1489669_46	PHROG	phrog_22978	NA	unknown function
UHGV-1489669_46	eggNOG-mapper	1321782.HMPREF1986_00356	NA	NA
UHGV-1489669_47	PHROG	phrog_2649	endolysin	lysis
UHGV-1489669_47	UniRef90	UniRef90_A0A358ARU4	PG_binding_1 domain-containing protein	NA
UHGV-1489669_47	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1489669_47	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1489669_48	PHROG	phrog_372	tail protein	tail
UHGV-1489669_48	UniRef90	UniRef90_A0A4S2AE74	Pilus assembly protein	NA
UHGV-1489669_48	eggNOG-mapper	552396.HMPREF0863_01449	NA	NA
UHGV-1489669_48	Structural annotation	PF05895, MF_04116, TIGR04216, COG2373	NA	NA
UHGV-1489669_49	Structural annotation	NF038340	NA	NA
UHGV-1489669_50	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1489669_50	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-1489669_50	Structural annotation	PF11134, MF_00923, NF010730, COG4257, COG5156	NA	NA