UHGV-1489953

Genome information

vOTU vOTU-019429

Genome length 36,658 bps

CDS count 56

Completeness 86.71% (medium-quality)

geNomad score 0.9829

Prediction confidence Confident

Genome information
Genome ID	UHGV-1489953
vOTU ID	vOTU-019429
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0249476
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9829
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.82
Jumbo phage	No

Genome content
Genome length	36,658 bps
GC content	54.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.64%
Average CDS length	603.27 bps
tRNA count	6
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1489953_2	Structural annotation	PF12510	NA	NA
UHGV-1489953_3	PHROG	phrog_20016	NA	unknown function
UHGV-1489953_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1489953_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1489953_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1489953_5	PHROG	phrog_16490	NA	unknown function
UHGV-1489953_5	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1489953_6	PHROG	phrog_22984	NA	unknown function
UHGV-1489953_7	PHROG	phrog_21718	NA	unknown function
UHGV-1489953_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1489953_8	PHROG	phrog_3754	NA	unknown function
UHGV-1489953_8	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-1489953_10	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-1489953_10	Structural annotation	PF13560, NF040522	NA	NA
UHGV-1489953_11	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1489953_11	UniRef90	UniRef90_A0A0K9N8D8	Putative AP2 domain protein	NA
UHGV-1489953_11	eggNOG-mapper	742740.HMPREF9474_00071	NA	NA
UHGV-1489953_11	Structural annotation	PF18337, PF00847	NA	NA
UHGV-1489953_12	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-1489953_15	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-1489953_15	PHROG	phrog_819	tail protein	tail
UHGV-1489953_15	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-1489953_15	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-1489953_15	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1489953_16	PHROG	phrog_15303	NA	unknown function
UHGV-1489953_18	KOfam	K07273	acm; lysozyme	NA
UHGV-1489953_18	PHROG	phrog_291	endolysin	lysis
UHGV-1489953_18	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-1489953_18	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-1489953_18	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1489953_18	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1489953_18	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1489953_19	PHROG	phrog_2310	NA	unknown function
UHGV-1489953_20	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-1489953_20	COG	COG5492	NA	NA
UHGV-1489953_21	PHROG	phrog_3558	tail protein	tail
UHGV-1489953_21	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-1489953_21	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-1489953_21	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1489953_21	COG	COG4926	Phage-related protein	NA
UHGV-1489953_21	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1489953_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1489953_22	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-1489953_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-1489953_22	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1489953_23	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1489953_23	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-1489953_23	eggNOG-mapper	1216932.CM240_0683	tape measure	NA
UHGV-1489953_23	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1489953_23	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1489953_23	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1489953_23	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1489953_26	PHROG	phrog_885	major tail protein	tail
UHGV-1489953_26	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1489953_26	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1489953_27	Structural annotation	PF13554	NA	NA
UHGV-1489953_28	PHROG	phrog_17977	NA	unknown function
UHGV-1489953_28	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-1489953_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1489953_30	PHROG	phrog_247	major head protein	head and packaging
UHGV-1489953_30	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-1489953_30	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-1489953_30	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1489953_30	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1489953_31	Structural annotation	PF06810	NA	NA
UHGV-1489953_32	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1489953_32	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-1489953_32	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1489953_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1489953_33	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-1489953_33	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1489953_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1489953_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1489953_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1489953_35	PHROG	phrog_8680	NA	unknown function
UHGV-1489953_35	UniRef90	UniRef90_A0A6N7TNE8	NA	NA
UHGV-1489953_35	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1489953_35	Pfam	PF14386	NA	DUF4417
UHGV-1489953_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1489953_35	Structural annotation	PF14386	NA	NA
UHGV-1489953_36	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1489953_36	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-1489953_36	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1489953_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1489953_36	COG	COG2369	NA	NA
UHGV-1489953_36	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1489953_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-1489953_37	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-1489953_37	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1489953_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1489953_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1489953_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1489953_38	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1489953_38	UniRef90	UniRef90_A0A1Y4ES07	Terminase	NA
UHGV-1489953_38	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-1489953_38	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1489953_38	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1489953_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1489953_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-1489953_38	Structural annotation	PF04466, PF16677, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1489953_39	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1489953_39	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1489953_39	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-1489953_39	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-1489953_39	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1489953_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1489953_39	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1489953_39	COG	COG0863	DNA modification methylase	NA
UHGV-1489953_39	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1489953_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1489953_41	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-1489953_41	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-1489953_41	Pfam	PF07374	NA	DUF1492
UHGV-1489953_41	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1489953_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1489953_43	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1489953_43	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1489953_43	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-1489953_43	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1489953_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1489953_43	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1489953_44	PHROG	phrog_3136	NA	unknown function
UHGV-1489953_44	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-1489953_44	eggNOG-mapper	1235792.C808_00630	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1489953_44	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1489953_44	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1489953_46	Structural annotation	PF11417	NA	NA
UHGV-1489953_47	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1489953_47	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1489953_47	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-1489953_47	eggNOG-mapper	877411.JMMA01000002_gene2052	NA	NA
UHGV-1489953_47	Pfam	PF19808	NA	DUF6291
UHGV-1489953_47	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1489953_47	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1489953_47	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-1489953_48	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-1489953_48	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-1489953_49	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1489953_49	UniRef90	UniRef90_A0A3A6EAW6	Phage recombination protein Bet	NA
UHGV-1489953_49	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-1489953_49	Pfam	PF03837	RecT family	RecT
UHGV-1489953_49	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1489953_49	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1489953_49	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1489953_50	PHROG	phrog_674	NA	unknown function
UHGV-1489953_50	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-1489953_50	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-1489953_50	Pfam	PF07083	NA	DUF1351
UHGV-1489953_50	Structural annotation	PF07083	NA	NA
UHGV-1489953_51	Structural annotation	PF14120	NA	NA
UHGV-1489953_53	Structural annotation	PF12270, NF040944	NA	NA
UHGV-1489953_54	Structural annotation	PF10743, NF033787	NA	NA
UHGV-1489953_56	PHROG	phrog_27197	NA	unknown function
UHGV-1489953_56	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-1489953_56	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1489953_56	Structural annotation	NF007410	NA	NA