UHGV-1490699

Genome information

Genome length 44,408 bps

CDS count 62

Completeness 95.30% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-1490699
vOTU ID	vOTU-010141
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0290576
BioSample	SAMN00715242
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.30% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.16
Jumbo phage	No

Genome content
Genome length	44,408 bps
GC content	45.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.30%
Average CDS length	657.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1490699_1	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-1490699_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1490699_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1490699_7	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-1490699_7	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1490699_7	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1490699_7	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-1490699_9	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-1490699_9	Structural annotation	PF21277	NA	NA
UHGV-1490699_10	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1490699_10	UniRef90	UniRef90_R4K6R4	AP2 domain-containing protein	NA
UHGV-1490699_10	eggNOG-mapper	86416.Clopa_2526	AP2 domain	NA
UHGV-1490699_10	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1490699_10	Structural annotation	PF10729, PF13392	NA	NA
UHGV-1490699_12	PHROG	phrog_4105	NA	unknown function
UHGV-1490699_12	eggNOG-mapper	1120998.AUFC01000030_gene2251	NA	NA
UHGV-1490699_13	PHROG	phrog_1141	tail fiber protein	tail
UHGV-1490699_13	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-1490699_13	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-1490699_13	Pfam	PF14301	NA	DUF4376
UHGV-1490699_13	Structural annotation	PF14301	NA	NA
UHGV-1490699_14	Structural annotation	PF08948	NA	NA
UHGV-1490699_15	PHROG	phrog_1640	tail protein	tail
UHGV-1490699_15	eggNOG-mapper	1123288.SOV_1c10770	Right handed beta helix region	NA
UHGV-1490699_15	COG	COG5434	Polygalacturonase	NA
UHGV-1490699_15	Structural annotation	PF03906	NA	NA
UHGV-1490699_17	PHROG	phrog_9880	NA	unknown function
UHGV-1490699_17	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-1490699_17	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-1490699_17	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1490699_18	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-1490699_18	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1490699_18	Structural annotation	PF01464, COG0741	NA	NA
UHGV-1490699_19	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1490699_19	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-1490699_19	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-1490699_20	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1490699_20	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-1490699_21	PHROG	phrog_376	tail protein	tail
UHGV-1490699_21	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-1490699_21	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-1490699_21	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1490699_22	PHROG	phrog_394	tail protein	tail
UHGV-1490699_22	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-1490699_22	eggNOG-mapper	1123288.SOV_1c10710	NA	NA
UHGV-1490699_22	Structural annotation	PF17212	NA	NA
UHGV-1490699_23	PHROG	phrog_427	NA	unknown function
UHGV-1490699_23	Structural annotation	PF21190	NA	NA
UHGV-1490699_24	PHROG	phrog_212	major head protein	head and packaging
UHGV-1490699_24	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-1490699_24	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-1490699_24	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1490699_24	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1490699_25	PHROG	phrog_458	protease	other
UHGV-1490699_25	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-1490699_26	PHROG	phrog_528	NA	unknown function
UHGV-1490699_26	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-1490699_27	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1490699_27	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-1490699_27	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-1490699_27	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1490699_27	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1490699_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1490699_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1490699_29	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-1490699_29	eggNOG-mapper	568816.Acin_1836	Terminase RNaseH-like domain	NA
UHGV-1490699_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1490699_29	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1490699_29	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1490699_31	UniRef90	UniRef90_UPI00103300F2	helix-turn-helix domain-containing protein	NA
UHGV-1490699_31	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-1490699_31	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-1490699_32	Structural annotation	PF13983	NA	NA
UHGV-1490699_33	PHROG	phrog_15863	NA	unknown function
UHGV-1490699_33	UniRef90	UniRef90_R6WLL6	Cytochrome c domain-containing protein	NA
UHGV-1490699_33	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-1490699_33	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-1490699_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1490699_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1490699_38	UniRef90	UniRef90_R6WGR4	Single-stranded DNA-binding protein	NA
UHGV-1490699_38	eggNOG-mapper	1280954.HPO_10557	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1490699_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1490699_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1490699_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1490699_38	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-1490699_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1490699_39	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1490699_39	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1490699_39	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-1490699_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1490699_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1490699_39	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1490699_41	Structural annotation	PF16857, MF_00273, NF001981, COG2157	NA	NA
UHGV-1490699_45	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-1490699_45	PHROG	phrog_7713	NA	unknown function
UHGV-1490699_45	UniRef90	UniRef90_A0A412X6I1	Pentapeptide repeat-containing protein	NA
UHGV-1490699_45	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1490699_45	Structural annotation	PF13599, NF011744	NA	NA
UHGV-1490699_46	PHROG	phrog_10714	NA	unknown function
UHGV-1490699_46	Structural annotation	PF21173	NA	NA
UHGV-1490699_50	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1490699_50	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-1490699_50	eggNOG-mapper	1211817.CCAT010000007_gene1058	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1490699_50	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1490699_50	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1490699_50	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1490699_50	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-1490699_52	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1490699_52	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1490699_52	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-1490699_52	eggNOG-mapper	431943.CKL_1895	RecT family	NA
UHGV-1490699_52	Pfam	PF03837	RecT family	RecT
UHGV-1490699_52	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1490699_52	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1490699_52	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1490699_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1490699_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1490699_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1490699_54	UniRef90	UniRef90_R6WLK2	Conserved domain protein	NA
UHGV-1490699_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1490699_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1490699_54	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1490699_55	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1490699_55	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-1490699_55	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-1490699_55	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1490699_55	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1490699_55	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1490699_55	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1490699_57	PHROG	phrog_14367	NA	unknown function
UHGV-1490699_57	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-1490699_57	eggNOG-mapper	397291.C804_02419	LysM domain	NA
UHGV-1490699_57	Pfam	PF01476	LysM domain	LysM
UHGV-1490699_57	COG	COG1388	LysM repeat	NA
UHGV-1490699_57	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-1490699_58	Structural annotation	NF041909	NA	NA
UHGV-1490699_59	PHROG	phrog_6058	NA	unknown function
UHGV-1490699_59	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-1490699_59	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-1490699_59	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1490699_62	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1490699_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1490699_62	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-1490699_62	eggNOG-mapper	1151292.QEW_0725	DNA-binding helix-turn-helix protein	NA
UHGV-1490699_62	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1490699_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1490699_62	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA