UHGV-1491194

Genome information

Genome length 26,402 bps

CDS count 30

Completeness 55.76% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-1491194
vOTU ID	vOTU-035312
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0190896
BioSample	SAMN02333967
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.98
Jumbo phage	No

Genome content
Genome length	26,402 bps
GC content	31.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	94.68%
Average CDS length	834.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1491194_1	PHROG	phrog_1558	NA	unknown function
UHGV-1491194_1	eggNOG-mapper	632245.CLP_2622	NA	NA
UHGV-1491194_2	PHROG	phrog_9079	NA	unknown function
UHGV-1491194_2	eggNOG-mapper	445973.CLOBAR_02450	NA	NA
UHGV-1491194_3	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1491194_3	UniRef90	UniRef90_UPI0005E1909C	phage terminase small subunit	NA
UHGV-1491194_3	eggNOG-mapper	290402.Cbei_1635	DNA packaging	NA
UHGV-1491194_3	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1491194_3	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1491194_3	COG	COG5484	NA	NA
UHGV-1491194_3	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-1491194_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1491194_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1491194_4	UniRef90	UniRef90_UPI00036E983E	phage portal protein	NA
UHGV-1491194_4	eggNOG-mapper	1292035.H476_1019	Phage terminase large subunit	NA
UHGV-1491194_4	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1491194_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-1491194_4	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1491194_5	PHROG	phrog_533	portal protein	head and packaging
UHGV-1491194_5	UniRef90	UniRef90_UPI00036E0D7F	phage portal protein	NA
UHGV-1491194_5	eggNOG-mapper	536233.CLO_0882	NA	NA
UHGV-1491194_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1491194_5	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1491194_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1491194_6	UniRef90	UniRef90_UPI000364DC3E	phage minor capsid protein	NA
UHGV-1491194_6	eggNOG-mapper	536233.CLO_0883	Phage minor capsid protein 2	NA
UHGV-1491194_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1491194_6	COG	COG2369	NA	NA
UHGV-1491194_6	Structural annotation	PF06152	NA	NA
UHGV-1491194_7	PHROG	phrog_918	NA	unknown function
UHGV-1491194_7	UniRef90	UniRef90_UPI00096A904F	NA	NA
UHGV-1491194_7	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-1491194_7	Pfam	PF19791	NA	DUF6275
UHGV-1491194_8	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1491194_8	UniRef90	UniRef90_UPI001F3ECC8A	NA	NA
UHGV-1491194_8	eggNOG-mapper	1415774.U728_1667	NA	NA
UHGV-1491194_8	Pfam	PF14359	NA	DUF4406
UHGV-1491194_10	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1491194_10	UniRef90	UniRef90_UPI0006C08B27	phage scaffolding protein	NA
UHGV-1491194_10	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-1491194_10	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1491194_10	Structural annotation	PF06810	NA	NA
UHGV-1491194_11	PHROG	phrog_422	major head protein	head and packaging
UHGV-1491194_11	UniRef90	UniRef90_UPI0011DE1BAA	capsid protein	NA
UHGV-1491194_11	eggNOG-mapper	545697.HMPREF0216_02849	NA	NA
UHGV-1491194_11	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1491194_12	PHROG	phrog_1378	NA	unknown function
UHGV-1491194_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1491194_13	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-1491194_14	PHROG	phrog_3366	NA	unknown function
UHGV-1491194_14	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-1491194_14	Pfam	PF20536	NA	DUF6751
UHGV-1491194_14	Structural annotation	PF20536	NA	NA
UHGV-1491194_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1491194_15	UniRef90	UniRef90_UPI001D02A15E	minor capsid protein	NA
UHGV-1491194_15	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-1491194_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1491194_15	Structural annotation	PF11114	NA	NA
UHGV-1491194_16	PHROG	phrog_3266	tail completion	connector
UHGV-1491194_16	UniRef90	UniRef90_UPI000542DA3F	chloramphenicol resistance protein	NA
UHGV-1491194_16	eggNOG-mapper	545697.HMPREF0216_02854	NA	NA
UHGV-1491194_16	Structural annotation	PF12691	NA	NA
UHGV-1491194_17	PHROG	phrog_3099	NA	unknown function
UHGV-1491194_17	eggNOG-mapper	1292035.H476_1009	NA	NA
UHGV-1491194_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1491194_18	PHROG	phrog_4450	NA	unknown function
UHGV-1491194_18	UniRef90	UniRef90_UPI001A8FEF87	AP endonuclease	NA
UHGV-1491194_18	eggNOG-mapper	573061.Clocel_0218	NA	NA
UHGV-1491194_18	Pfam	PF20378	NA	DUF6673
UHGV-1491194_18	Structural annotation	PF20378	NA	NA
UHGV-1491194_19	PHROG	phrog_706	NA	unknown function
UHGV-1491194_19	UniRef90	UniRef90_UPI00036C8F95	bacteriophage Gp15 family protein	NA
UHGV-1491194_19	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-1491194_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1491194_19	Structural annotation	PF06854	NA	NA
UHGV-1491194_20	PHROG	phrog_9696	tail length tape measure protein	tail
UHGV-1491194_20	UniRef90	UniRef90_W1Y862	Phage tail tape measure protein, TP901 family, core region protein	NA
UHGV-1491194_20	eggNOG-mapper	536233.CLO_0896	tail tape measure protein	NA
UHGV-1491194_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1491194_21	PHROG	phrog_19074	NA	unknown function
UHGV-1491194_21	UniRef90	UniRef90_UPI00035DF3AF	phage tail tape measure protein	NA
UHGV-1491194_21	eggNOG-mapper	1410624.JNKK01000017_gene1985	Phage-related minor tail protein	NA
UHGV-1491194_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1491194_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1491194_21	COG	COG5283	Phage-related tail protein	NA
UHGV-1491194_21	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1491194_22	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1491194_22	UniRef90	UniRef90_UPI001D164D56	phage tail family protein	NA
UHGV-1491194_22	eggNOG-mapper	1499684.CCNP01000020_gene2277	Phage tail protein	NA
UHGV-1491194_22	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1491194_22	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1491194_22	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1491194_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-1491194_22	Structural annotation	PF05709, PF18342, TIGR01633, NF040670, COG4722, COG4991	NA	NA
UHGV-1491194_23	PHROG	phrog_6253	minor tail protein	tail
UHGV-1491194_23	UniRef90	UniRef90_UPI001D1653FC	phage tail protein	NA
UHGV-1491194_23	eggNOG-mapper	1340434.AXVA01000005_gene4864	Prophage endopeptidase tail	NA
UHGV-1491194_23	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1491194_23	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1491194_23	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1491194_23	COG	COG4926	Phage-related protein	NA
UHGV-1491194_23	Structural annotation	PF14594, PF08239, PF05382, TIGR01665, NF041850, NF033742, COG4926, COG4991, COG0791	NA	NA
UHGV-1491194_24	eggNOG-mapper	240302.BN982_04120	Phage minor structural protein	NA
UHGV-1491194_24	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1491194_24	Structural annotation	PF13157, PF13229, NF033679	NA	NA
UHGV-1491194_25	UniRef90	UniRef90_A0A1C5Y1A5	BppU_N domain-containing protein	NA
UHGV-1491194_25	eggNOG-mapper	416870.llmg_2086	domain, Protein	NA
UHGV-1491194_25	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1491194_27	PHROG	phrog_1382	NA	unknown function
UHGV-1491194_27	eggNOG-mapper	1410650.JHWL01000003_gene2818	NA	NA
UHGV-1491194_27	Structural annotation	NF040910	NA	NA
UHGV-1491194_28	PHROG	phrog_1193	hemolysin	other
UHGV-1491194_28	UniRef90	UniRef90_UPI0018AB0AA6	hemolysin XhlA family protein	NA
UHGV-1491194_28	eggNOG-mapper	445335.CBN_3060	Haemolysin XhlA	NA
UHGV-1491194_28	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-1491194_29	PHROG	phrog_962	holin	lysis
UHGV-1491194_29	UniRef90	UniRef90_UPI000983D253	phage holin	NA
UHGV-1491194_29	eggNOG-mapper	1391647.AVSV01000003_gene1694	COG5546 Small integral membrane protein	NA
UHGV-1491194_29	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1491194_29	COG	COG5546	NA	NA
UHGV-1491194_30	eggNOG-mapper	445973.CLOBAR_01731	Ami_3	NA
UHGV-1491194_30	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA