UHGV-1491570

Genome information

vOTU vOTU-019005

Genome length 44,588 bps

CDS count 76

Completeness 77.37% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-1491570
vOTU ID	vOTU-019005
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0291343
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.9
Jumbo phage	No

Genome content
Genome length	44,588 bps
GC content	47.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	80.10%
Average CDS length	472.07 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1491570_1	PHROG	phrog_5765	NA	unknown function
UHGV-1491570_1	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-1491570_1	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-1491570_1	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-1491570_3	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-1491570_3	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-1491570_3	Pfam	PF09274	ParG	ParG
UHGV-1491570_3	Structural annotation	PF10723	NA	NA
UHGV-1491570_6	PHROG	phrog_16490	NA	unknown function
UHGV-1491570_6	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1491570_7	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1491570_8	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1491570_9	Structural annotation	NF010188	NA	NA
UHGV-1491570_10	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-1491570_10	PHROG	phrog_3757	NA	unknown function
UHGV-1491570_10	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-1491570_10	eggNOG-mapper	768710.DesyoDRAFT_1087	ATPase family associated with various cellular activities (AAA)	NA
UHGV-1491570_10	PADLOC	IetA_00002	NA	ietAS
UHGV-1491570_10	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-1491570_10	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-1491570_10	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-1491570_11	Structural annotation	PF07878	NA	NA
UHGV-1491570_12	Pfam	PF04448	NA	DUF551
UHGV-1491570_13	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1491570_13	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1491570_13	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-1491570_13	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-1491570_13	Pfam	PF13614	AAA domain	AAA_31
UHGV-1491570_13	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1491570_13	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1491570_15	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1491570_15	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-1491570_15	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-1491570_15	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-1491570_15	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-1491570_15	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1491570_15	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-1491570_16	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-1491570_16	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1491570_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1491570_19	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-1491570_19	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-1491570_19	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1491570_19	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1491570_20	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-1491570_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1491570_20	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1491570_21	Structural annotation	PF10922	NA	NA
UHGV-1491570_24	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1491570_24	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-1491570_25	Structural annotation	PF14143	NA	NA
UHGV-1491570_26	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-1491570_26	eggNOG-mapper	1165096.ARWF01000001_gene689	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-1491570_26	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-1491570_26	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-1491570_26	Structural annotation	PF04606, NF007241	NA	NA
UHGV-1491570_28	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1491570_28	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-1491570_28	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-1491570_28	Pfam	PF13479	AAA domain	AAA_24
UHGV-1491570_28	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1491570_29	PHROG	phrog_18107	NA	unknown function
UHGV-1491570_29	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-1491570_29	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-1491570_29	Structural annotation	PF05037	NA	NA
UHGV-1491570_30	PHROG	phrog_28936	NA	unknown function
UHGV-1491570_30	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-1491570_30	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-1491570_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1491570_31	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1491570_31	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1491570_31	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1491570_31	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1491570_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1491570_31	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1491570_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1491570_31	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-1491570_32	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1491570_32	UniRef90	UniRef90_A0A8J7KX41	HNH endonuclease	NA
UHGV-1491570_32	eggNOG-mapper	213777.R9R2C9_9CAUD	HNH endonuclease	NA
UHGV-1491570_32	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1491570_32	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1491570_32	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1491570_32	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1491570_35	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-1491570_35	PHROG	phrog_359	DNA methyltransferase	other
UHGV-1491570_35	UniRef90	UniRef90_A0A6G3LYN7	DNA methyltransferase	NA
UHGV-1491570_35	eggNOG-mapper	887325.HMPREF0381_0367	MT-A70	NA
UHGV-1491570_35	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-1491570_35	Pfam	PF05063	MT-A70	MT-A70
UHGV-1491570_35	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-1491570_35	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-1491570_36	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1491570_36	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-1491570_36	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1491570_36	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1491570_38	PHROG	phrog_4856	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1491570_38	Structural annotation	PF11998, COG5420	NA	NA
UHGV-1491570_43	Structural annotation	PF16677	NA	NA
UHGV-1491570_44	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-1491570_44	PHROG	phrog_200	lipoprotein	other
UHGV-1491570_44	UniRef90	UniRef90_D4KCF4	Membrane protease subunits, stomatin/prohibitin homologs	NA
UHGV-1491570_44	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-1491570_44	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-1491570_44	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-1491570_44	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-1491570_46	Structural annotation	PF15731, TIGR03831	NA	NA
UHGV-1491570_49	Structural annotation	NF041588	NA	NA
UHGV-1491570_52	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-1491570_52	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1491570_52	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1491570_52	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1491570_52	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1491570_52	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1491570_53	PHROG	phrog_15768	NA	unknown function
UHGV-1491570_53	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-1491570_53	eggNOG-mapper	402612.FP2295	NA	NA
UHGV-1491570_53	Pfam	PF19808	NA	DUF6291
UHGV-1491570_53	Structural annotation	PF19808	NA	NA
UHGV-1491570_54	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1491570_54	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1491570_54	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-1491570_54	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-1491570_54	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1491570_54	COG	COG0305	Replicative DNA helicase	NA
UHGV-1491570_54	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1491570_55	PHROG	phrog_419	NA	unknown function
UHGV-1491570_55	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-1491570_55	eggNOG-mapper	768486.EHR_02665	NA	NA
UHGV-1491570_55	Structural annotation	PF14083	NA	NA
UHGV-1491570_56	PHROG	phrog_1709	NA	unknown function
UHGV-1491570_56	eggNOG-mapper	500632.CLONEX_01053	NA	NA
UHGV-1491570_57	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1491570_57	eggNOG-mapper	742738.HMPREF9460_00717	YqaJ viral recombinase family	NA
UHGV-1491570_57	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1491570_59	Structural annotation	MF_01553, NF010188, COG5503	NA	NA
UHGV-1491570_60	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-1491570_62	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1491570_62	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1491570_62	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-1491570_62	eggNOG-mapper	903814.ELI_3141	AntA/AntB antirepressor	NA
UHGV-1491570_62	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1491570_62	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1491570_62	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1491570_62	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-1491570_63	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-1491570_65	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-1491570_65	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1491570_65	UniRef90	UniRef90_A0A1H3G7A1	Site-specific DNA recombinase	NA
UHGV-1491570_65	eggNOG-mapper	931626.Awo_c01430	Resolvase, N terminal domain	NA
UHGV-1491570_65	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1491570_65	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1491570_65	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-1491570_67	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-1491570_67	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-1491570_67	UniRef90	UniRef90_UPI00067F3ABF	RNA-splicing ligase RtcB	NA
UHGV-1491570_67	eggNOG-mapper	1211844.CBLM010000044_gene358	tRNA-splicing ligase RtcB	NA
UHGV-1491570_67	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-1491570_67	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-1491570_67	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-1491570_68	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1491570_68	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-1491570_68	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-1491570_68	COG	COG5410	NA	NA
UHGV-1491570_68	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1491570_70	PHROG	phrog_64	portal protein	head and packaging
UHGV-1491570_70	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-1491570_70	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1491570_70	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1491570_70	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1491570_71	eggNOG-mapper	657322.FPR_23450	NA	NA
UHGV-1491570_74	PHROG	phrog_29	major head protein	head and packaging
UHGV-1491570_74	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-1491570_74	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-1491570_74	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1491570_74	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1491570_75	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-1491570_75	Structural annotation	TIGR01560	NA	NA