UHGV-1491802

Genome information

Genome length 42,662 bps

CDS count 58

Completeness 98.18% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-1491802
vOTU ID	vOTU-061159
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0282120
BioSample	SAMEA2737942
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.81
Jumbo phage	No

Genome content
Genome length	42,662 bps
GC content	62.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.43%
Average CDS length	676.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1491802_2	Structural annotation	PF07902, PF14400, NF012201	NA	NA
UHGV-1491802_3	PHROG	phrog_9116	tail protein	tail
UHGV-1491802_3	UniRef90	UniRef90_A0A1H5UQW3	Microcystin-dependent protein	NA
UHGV-1491802_3	eggNOG-mapper	1469557.JSWF01000027_gene1857	PFAM phage Tail Collar domain	NA
UHGV-1491802_3	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1491802_3	COG	COG4675	Phage tail collar domain	NA
UHGV-1491802_3	Structural annotation	PF07484, COG4675	NA	NA
UHGV-1491802_4	UniRef90	UniRef90_A0A2G1PH73	Fibronectin type-III domain-containing protein	NA
UHGV-1491802_4	eggNOG-mapper	78346.BRUM_0385	cellulase activity	NA
UHGV-1491802_4	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1491802_4	COG	COG4372	NA	NA
UHGV-1491802_4	Structural annotation	PF14594, PF00041, PF16323, MF_04116, NF033848, COG3500, COG3401	NA	NA
UHGV-1491802_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1491802_5	Structural annotation	PF20195, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1491802_6	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1491802_6	eggNOG-mapper	525246.HMPREF0058_0754	tape measure	NA
UHGV-1491802_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1491802_8	PHROG	phrog_117	major tail protein	tail
UHGV-1491802_8	UniRef90	UniRef90_UPI001E4900BB	Ig-like domain-containing protein	NA
UHGV-1491802_8	eggNOG-mapper	251221.35210773	self proteolysis	NA
UHGV-1491802_8	Pfam	PF01833	IPT/TIG domain	TIG
UHGV-1491802_8	COG	COG1372	Intein/homing endonuclease	NA
UHGV-1491802_8	Structural annotation	PF01833, PF04630, TIGR01603, COG3353, COG5437	NA	NA
UHGV-1491802_9	Structural annotation	PF16807	NA	NA
UHGV-1491802_10	Pfam	PF17395	NA	DUF5403
UHGV-1491802_10	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1491802_11	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1491802_12	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1491802_12	UniRef90	UniRef90_UPI001F20FEB4	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-1491802_12	eggNOG-mapper	68170.KL590469_gene1552	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1491802_12	Pfam	PF09355	NA	Phage_Gp19
UHGV-1491802_12	Structural annotation	PF09355	NA	NA
UHGV-1491802_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-1491802_13	UniRef90	UniRef90_UPI001E419B4C	phage major capsid protein	NA
UHGV-1491802_13	eggNOG-mapper	525246.HMPREF0058_0746	Phage capsid family	NA
UHGV-1491802_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1491802_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1491802_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1491802_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1491802_15	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1491802_15	UniRef90	UniRef90_A0A6M3SXE3	MuF-like minor capsid protein	NA
UHGV-1491802_15	eggNOG-mapper	1284679.HMPREF1626_03570	NA	NA
UHGV-1491802_16	PHROG	phrog_104	portal protein	head and packaging
UHGV-1491802_16	UniRef90	UniRef90_UPI001E4EFA46	phage portal protein	NA
UHGV-1491802_16	eggNOG-mapper	525246.HMPREF0058_0742	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1491802_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1491802_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1491802_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1491802_17	UniRef90	UniRef90_C0W4E7	Putative phage terminase, large subunit	NA
UHGV-1491802_17	eggNOG-mapper	525246.HMPREF0058_0741	Terminase	NA
UHGV-1491802_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1491802_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1491802_18	PHROG	phrog_226	minor tail protein	tail
UHGV-1491802_18	eggNOG-mapper	525246.HMPREF0058_0740	NA	NA
UHGV-1491802_24	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1491802_24	UniRef90	UniRef90_A0A4R7MB70	Helix-turn-helix protein	NA
UHGV-1491802_24	eggNOG-mapper	358823.DF19_25140	NA	NA
UHGV-1491802_24	Pfam	PF03428	Replication protein C N-terminal domain	RP-C
UHGV-1491802_24	COG	COG3756	NA	NA
UHGV-1491802_24	Structural annotation	PF03428, MF_01909, NF008122, COG2345	NA	NA
UHGV-1491802_28	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1491802_28	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1491802_28	UniRef90	UniRef90_UPI00178A16A6	replicative DNA helicase	NA
UHGV-1491802_28	eggNOG-mapper	1463825.JNXC01000001_gene5676	Participates in initiation and elongation during chromosome replication	NA
UHGV-1491802_28	Pfam	PF05204	Homing endonuclease	Hom_end
UHGV-1491802_28	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1491802_28	COG	COG0305	Replicative DNA helicase	NA
UHGV-1491802_28	Structural annotation	PF03796, PF05203, PF00772, MF_04155, MF_01420, TIGR00665, COG0305	NA	NA
UHGV-1491802_29	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-1491802_30	PHROG	phrog_1035	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-1491802_30	eggNOG-mapper	1404245.CGLY_07350	HNH nucleases	NA
UHGV-1491802_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1491802_37	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1491802_37	UniRef90	UniRef90_A0A5J6TU15	ERF family ssDNA binding protein	NA
UHGV-1491802_37	eggNOG-mapper	1086751.G3ME42_9CAUD	ERF superfamily	NA
UHGV-1491802_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-1491802_37	Structural annotation	PF04404, MF_00984, TIGR00607, COG5055	NA	NA
UHGV-1491802_38	PHROG	phrog_5168	NA	unknown function
UHGV-1491802_39	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1491802_39	UniRef90	UniRef90_UPI001865DE73	HNH endonuclease	NA
UHGV-1491802_39	eggNOG-mapper	1340709.S5W0K5_9CAUD	HNH endonuclease	NA
UHGV-1491802_43	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1491802_43	UniRef90	UniRef90_G3M5E8	Holliday junction resolvase	NA
UHGV-1491802_43	eggNOG-mapper	1203568.HMPREF1484_00227	NA	NA
UHGV-1491802_43	Structural annotation	COG1591	NA	NA
UHGV-1491802_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1491802_44	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1491802_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1491802_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1491802_45	UniRef90	UniRef90_UPI001555899C	single-stranded DNA-binding protein	NA
UHGV-1491802_45	eggNOG-mapper	521393.JH806633_gene1261	Single-strand binding protein family	NA
UHGV-1491802_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1491802_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1491802_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1491802_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1491802_45	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1491802_51	PHROG	phrog_284	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1491802_51	UniRef90	UniRef90_A0A2Z5HCT1	Exonuclease	NA
UHGV-1491802_51	eggNOG-mapper	1156844.KB891852_gene3727	NA	NA
UHGV-1491802_51	Structural annotation	PF12850, PF01047, MF_00325, NF003118, COG1311	NA	NA
UHGV-1491802_52	Structural annotation	NF033675	NA	NA
UHGV-1491802_53	Structural annotation	PF03422, NF033675	NA	NA
UHGV-1491802_54	Pfam	PF12138	Spherulation-specific family 4	Spherulin4
UHGV-1491802_54	Structural annotation	PF12138, MF_00418, NF006945, COG0329	NA	NA
UHGV-1491802_55	Structural annotation	PF13620, TIGR02423	NA	NA
UHGV-1491802_57	PHROG	phrog_443	holin	lysis
UHGV-1491802_57	UniRef90	UniRef90_A0A7T0PDU3	Holin	NA
UHGV-1491802_57	eggNOG-mapper	1203190.CAJP01000005_gene1682	Putative lactococcus lactis phage r1t holin	NA
UHGV-1491802_57	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1491802_57	Structural annotation	PF16945	NA	NA
UHGV-1491802_58	KOfam	K07273	acm; lysozyme	NA
UHGV-1491802_58	PHROG	phrog_291	endolysin	lysis
UHGV-1491802_58	UniRef90	UniRef90_U1RWY8	Glycosyl hydrolase family 25	NA
UHGV-1491802_58	eggNOG-mapper	1329250.WOSG25_031550	Lyzozyme M1	NA
UHGV-1491802_58	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1491802_58	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1491802_58	Structural annotation	PF01183, COG3757	NA	NA