UHGV-1492211

Genome information

Genome length 25,601 bps

CDS count 45

Completeness 59.65% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-1492211
vOTU ID	vOTU-035924
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0186028
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.18
Jumbo phage	No

Genome content
Genome length	25,601 bps
GC content	51.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	89.35%
Average CDS length	513.73 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1492211_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1492211_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1492211_3	UniRef90	UniRef90_A0A6N7TQ80	PBSX family phage terminase large subunit	NA
UHGV-1492211_3	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-1492211_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1492211_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1492211_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1492211_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-1492211_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1492211_8	eggNOG-mapper	97138.C820_00806	Bacteriophage replication protein O	NA
UHGV-1492211_9	UniRef90	UniRef90_A0A0H5Q9K0	NA	NA
UHGV-1492211_9	Pfam	PF19808	NA	DUF6291
UHGV-1492211_11	UniRef90	UniRef90_A0A3D1LDL3	DNA-binding protein	NA
UHGV-1492211_11	eggNOG-mapper	1235797.C816_00778	TIGRFAM DNA binding domain, excisionase family	NA
UHGV-1492211_11	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1492211_12	KOfam	K14059	int; integrase	NA
UHGV-1492211_12	PHROG	phrog_1	integrase	integration and excision
UHGV-1492211_12	UniRef90	UniRef90_UPI001898152E	site-specific integrase	NA
UHGV-1492211_12	eggNOG-mapper	877411.JMMA01000002_gene2540	Belongs to the 'phage' integrase family	NA
UHGV-1492211_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1492211_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1492211_12	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1492211_13	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1492211_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1492211_14	UniRef90	UniRef90_UPI00164EC49A	minor capsid protein	NA
UHGV-1492211_14	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-1492211_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1492211_14	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1492211_15	PHROG	phrog_3366	NA	unknown function
UHGV-1492211_15	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1492211_15	Pfam	PF20536	NA	DUF6751
UHGV-1492211_15	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1492211_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1492211_16	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1492211_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-1492211_17	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-1492211_17	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1492211_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1492211_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1492211_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1492211_17	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1492211_18	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1492211_18	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-1492211_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1492211_20	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-1492211_20	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-1492211_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1492211_20	COG	COG2369	NA	NA
UHGV-1492211_20	Structural annotation	PF06152, PF15542	NA	NA
UHGV-1492211_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-1492211_21	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-1492211_21	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1492211_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1492211_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1492211_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1492211_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1492211_22	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1492211_22	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1492211_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1492211_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1492211_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1492211_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1492211_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1492211_24	KOfam	K01854	glf; UDP-galactopyranose mutase [EC:5.4.99.9]	NA
UHGV-1492211_24	PHROG	phrog_9677	NA	unknown function
UHGV-1492211_24	UniRef90	UniRef90_A0A378NUT7	UDP-galactopyranose mutase	NA
UHGV-1492211_24	eggNOG-mapper	546270.GEMHA0001_1123	UDP-galactopyranose mutase	NA
UHGV-1492211_24	Pfam	PF13450	NAD(P)-binding Rossmann-like domain	NAD_binding_8
UHGV-1492211_24	Pfam	PF03275	UDP-galactopyranose mutase	GLF
UHGV-1492211_24	NCBIFam	TIGR00031.1	UDP-galactopyranose mutase	NA
UHGV-1492211_24	COG	COG0562	UDP-galactopyranose mutase	NA
UHGV-1492211_24	Structural annotation	PF03275, PF13450, MF_02074, TIGR00031, COG0562	NA	NA
UHGV-1492211_25	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-1492211_25	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-1492211_25	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-1492211_25	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-1492211_25	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-1492211_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1492211_26	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1492211_26	UniRef90	UniRef90_A0A1C5ZCG7	ParB/RepB/Spo0J family partition protein	NA
UHGV-1492211_26	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-1492211_26	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1492211_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1492211_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1492211_26	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-1492211_28	eggNOG-mapper	97139.C824_00726	NA	NA
UHGV-1492211_28	Structural annotation	PF02211	NA	NA
UHGV-1492211_30	UniRef90	UniRef90_A0A4R1QMH6	HTH cro/C1-type domain-containing protein	NA
UHGV-1492211_30	eggNOG-mapper	445972.ANACOL_00210	NA	NA
UHGV-1492211_30	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-1492211_31	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-1492211_31	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1492211_33	PHROG	phrog_3136	NA	unknown function
UHGV-1492211_33	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-1492211_33	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1492211_33	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1492211_33	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-1492211_36	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1492211_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1492211_36	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1492211_36	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1492211_36	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1492211_36	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1492211_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1492211_36	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1492211_41	PHROG	phrog_3392	NA	unknown function
UHGV-1492211_41	UniRef90	UniRef90_A8AT45	Gp21	NA
UHGV-1492211_41	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-1492211_41	Pfam	PF04448	NA	DUF551
UHGV-1492211_41	Structural annotation	NF041588	NA	NA
UHGV-1492211_42	eggNOG-mapper	1280679.ATVX01000009_gene1716	NA	NA
UHGV-1492211_42	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1492211_42	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1492211_43	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1492211_43	eggNOG-mapper	272630.MexAM1_META1p3999	NA	NA
UHGV-1492211_44	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1492211_44	UniRef90	UniRef90_A0A533R9G2	Holliday junction endonuclease	NA
UHGV-1492211_44	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-1492211_44	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-1492211_44	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-1492211_45	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-1492211_45	COG	COG5164	Transcription elongation factor SPT5	NA