UHGV-1492630

Genome information

Genome length 46,790 bps

CDS count 94

Completeness 97.60% (high-quality)

geNomad score 0.9678

Prediction confidence Confident

Genome information
Genome ID	UHGV-1492630
vOTU ID	vOTU-009792
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0300597
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.60% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9678
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.99
Jumbo phage	No

Genome content
Genome length	46,790 bps
GC content	28.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	91.17%
Average CDS length	456.38 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1492630_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1492630_6	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-1492630_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1492630_8	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1492630_9	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1492630_9	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1492630_9	UniRef90	UniRef90_A0A843HIU7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1492630_9	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-1492630_9	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1492630_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1492630_9	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1492630_10	Structural annotation	PF16677	NA	NA
UHGV-1492630_11	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1492630_11	UniRef90	UniRef90_A0A7H0FM71	Phage terminase large subunit	NA
UHGV-1492630_11	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-1492630_11	COG	COG5410	NA	NA
UHGV-1492630_11	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1492630_12	PHROG	phrog_64	portal protein	head and packaging
UHGV-1492630_12	UniRef90	UniRef90_A0A1C5MXM2	Phage portal protein, SPP1 family	NA
UHGV-1492630_12	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1492630_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1492630_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1492630_13	Structural annotation	PF14265	NA	NA
UHGV-1492630_14	PHROG	phrog_247	major head protein	head and packaging
UHGV-1492630_14	UniRef90	UniRef90_A0A3B9CD38	Phage coat protein	NA
UHGV-1492630_14	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-1492630_14	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-1492630_14	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1492630_15	Structural annotation	PF05135	NA	NA
UHGV-1492630_16	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1492630_19	Structural annotation	PF05657	NA	NA
UHGV-1492630_20	Structural annotation	PF16463, PF17892, MF_04116, TIGR02241, NF012211, COG5437	NA	NA
UHGV-1492630_21	Structural annotation	PF10666	NA	NA
UHGV-1492630_23	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1492630_23	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-1492630_23	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1492630_23	Structural annotation	PF20155	NA	NA
UHGV-1492630_24	PHROG	phrog_1194	NA	unknown function
UHGV-1492630_24	Pfam	PF20458	NA	DUF6711
UHGV-1492630_24	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1492630_25	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-1492630_25	COG	COG4926	Phage-related protein	NA
UHGV-1492630_26	PHROG	phrog_372	tail protein	tail
UHGV-1492630_26	UniRef90	UniRef90_R7FHU8	Tail protein	NA
UHGV-1492630_26	eggNOG-mapper	658659.HMPREF0983_03294	NA	NA
UHGV-1492630_26	COG	COG4675	Phage tail collar domain	NA
UHGV-1492630_26	Structural annotation	PF05895, PF00386, MF_04116, NF010681, COG1361	NA	NA
UHGV-1492630_27	Structural annotation	PF17790, NF011770	NA	NA
UHGV-1492630_28	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-1492630_28	PHROG	phrog_819	tail protein	tail
UHGV-1492630_28	eggNOG-mapper	1122931.AUAE01000005_gene3260	NA	NA
UHGV-1492630_28	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1492630_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1492630_30	PHROG	phrog_7698	endolysin	lysis
UHGV-1492630_30	UniRef90	UniRef90_A0A353JBB4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1492630_30	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1492630_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1492630_30	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1492630_30	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1492630_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1492630_32	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1492630_32	UniRef90	UniRef90_H6LCD1	Bacteriophage-like protein	NA
UHGV-1492630_32	eggNOG-mapper	1298920.KI911353_gene2714	DnaD domain protein	NA
UHGV-1492630_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1492630_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1492630_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1492630_33	UniRef90	UniRef90_A0A223MJF7	DNA helicase	NA
UHGV-1492630_33	eggNOG-mapper	1232449.BAHV02000016_gene1835	Participates in initiation and elongation during chromosome replication	NA
UHGV-1492630_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1492630_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-1492630_33	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1492630_37	PHROG	phrog_674	NA	unknown function
UHGV-1492630_37	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-1492630_37	eggNOG-mapper	641112.ACOK01000103_gene524	NA	NA
UHGV-1492630_37	Pfam	PF07083	NA	DUF1351
UHGV-1492630_37	Structural annotation	PF07083	NA	NA
UHGV-1492630_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1492630_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1492630_39	UniRef90	UniRef90_A0A1W1YQ81	Recombination protein RecT	NA
UHGV-1492630_39	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-1492630_39	Pfam	PF03837	RecT family	RecT
UHGV-1492630_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1492630_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1492630_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1492630_40	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1492630_40	UniRef90	UniRef90_A0A353JB44	Lactamase_B domain-containing protein	NA
UHGV-1492630_40	eggNOG-mapper	1405498.SSIM_04980	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1492630_40	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1492630_40	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1492630_46	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1492630_46	PHROG	phrog_1	integrase	integration and excision
UHGV-1492630_46	UniRef90	UniRef90_Q2MM22	Putative integrase	NA
UHGV-1492630_46	eggNOG-mapper	441768.ACL_0679	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1492630_46	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1492630_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1492630_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1492630_46	Structural annotation	PF00589, PF02899, MF_01807, NF001399, COG4974	NA	NA
UHGV-1492630_51	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1492630_52	PHROG	phrog_11947	NA	unknown function
UHGV-1492630_54	PHROG	phrog_7839	NA	unknown function
UHGV-1492630_54	eggNOG-mapper	202954.BBNK01000034_gene3794	NA	NA
UHGV-1492630_62	Structural annotation	PF20384, COG1862	NA	NA
UHGV-1492630_63	Structural annotation	PF13269	NA	NA
UHGV-1492630_67	PHROG	phrog_4601	NA	unknown function
UHGV-1492630_68	PHROG	phrog_3392	NA	unknown function
UHGV-1492630_68	UniRef90	UniRef90_A8AT45	Gp21	NA
UHGV-1492630_68	eggNOG-mapper	40523.A8AT45_BPA51	NA	NA
UHGV-1492630_74	eggNOG-mapper	1123263.AUKY01000096_gene1822	C-5 cytosine-specific DNA methylase	NA
UHGV-1492630_74	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1492630_78	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1492630_86	PHROG	phrog_4264	NA	unknown function
UHGV-1492630_86	eggNOG-mapper	442493.A8E2H1_BPPHE	NA	NA