UHGV-1492868

Genome information

Genome length 45,381 bps

CDS count 78

Completeness 72.61% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-1492868
vOTU ID	vOTU-035927
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0294962
BioSample	SAMN02675046
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.34
Jumbo phage	No

Genome content
Genome length	45,381 bps
GC content	54.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	87.53%
Average CDS length	512.65 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1492868_1	UniRef90	UniRef90_UPI0010F9FB23	Lar family restriction alleviation protein	NA
UHGV-1492868_8	UniRef90	UniRef90_E0Q7I3	Cell wall synthesis protein Wag31	NA
UHGV-1492868_8	Pfam	PF05103	DivIVA protein	DivIVA
UHGV-1492868_8	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-1492868_9	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-1492868_9	UniRef90	UniRef90_W4NB58	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1492868_9	eggNOG-mapper	1435051.BMOU_0801	C-5 cytosine-specific DNA methylase	NA
UHGV-1492868_9	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1492868_9	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1492868_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1492868_10	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-1492868_10	UniRef90	UniRef90_A7A2L4	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1492868_10	eggNOG-mapper	1435051.BMOU_0800	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1492868_10	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1492868_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1492868_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1492868_11	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-1492868_11	UniRef90	UniRef90_E0Q7I2	NA	NA
UHGV-1492868_11	eggNOG-mapper	1688.BCUN_0592	NA	NA
UHGV-1492868_11	Pfam	PF12684	NA	DUF3799
UHGV-1492868_11	Structural annotation	PF12684, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1492868_12	UniRef90	UniRef90_UPI0018DDE9DF	ERF family protein	NA
UHGV-1492868_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-1492868_12	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1492868_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1492868_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1492868_14	UniRef90	UniRef90_E0Q7H9	Single-stranded DNA-binding protein	NA
UHGV-1492868_14	eggNOG-mapper	1435051.BMOU_0793	Single-strand binding protein family	NA
UHGV-1492868_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1492868_14	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-1492868_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1492868_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1492868_14	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-1492868_16	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1492868_16	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1492868_16	UniRef90	UniRef90_E0Q7H7	Helicase C-terminal domain protein	NA
UHGV-1492868_16	eggNOG-mapper	1122997.AUDD01000007_gene815	DEAD-like helicases superfamily	NA
UHGV-1492868_16	PADLOC	DpdE_00013	DpdE	DPD
UHGV-1492868_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1492868_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1492868_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1492868_16	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-1492868_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1492868_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1492868_17	UniRef90	UniRef90_E0Q7H6	Methyltransferase	NA
UHGV-1492868_17	eggNOG-mapper	1122997.AUDD01000007_gene814	N-4 methylation of cytosine	NA
UHGV-1492868_17	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-1492868_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1492868_17	COG	COG0863	DNA modification methylase	NA
UHGV-1492868_17	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1492868_18	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1492868_18	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-1492868_18	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-1492868_18	Structural annotation	PF13588, COG1591	NA	NA
UHGV-1492868_19	UniRef90	UniRef90_UPI0010F96178	DNA topoisomerase I	NA
UHGV-1492868_20	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1492868_20	eggNOG-mapper	1394176.AWUO01000014_gene675	NA	NA
UHGV-1492868_21	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1492868_21	UniRef90	UniRef90_A0A261ESQ4	C2H2-type domain-containing protein	NA
UHGV-1492868_21	eggNOG-mapper	1437603.BMON_1161	HNH endonuclease	NA
UHGV-1492868_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1492868_23	PHROG	phrog_236	nucleotide kinase	other
UHGV-1492868_23	UniRef90	UniRef90_A0A1X3A1Z3	NA	NA
UHGV-1492868_23	eggNOG-mapper	1680.BADO_1253	NA	NA
UHGV-1492868_24	UniRef90	UniRef90_UPI0010F6A35A	deoxyribodipyrimidine photolyase	NA
UHGV-1492868_27	UniRef90	UniRef90_UPI0018C3295F	transposase	NA
UHGV-1492868_27	eggNOG-mapper	1435051.BMOU_0784	NA	NA
UHGV-1492868_29	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-1492868_29	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-1492868_29	Structural annotation	PF01815	NA	NA
UHGV-1492868_31	UniRef90	UniRef90_A0A2K9BZP4	GTP-binding protein	NA
UHGV-1492868_31	Structural annotation	PF08410, NF005233, COG5515	NA	NA
UHGV-1492868_34	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1492868_34	UniRef90	UniRef90_A0A564VUK1	MazG domain-containing protein	NA
UHGV-1492868_34	eggNOG-mapper	1499683.CCFF01000005_gene41	NA	NA
UHGV-1492868_34	Structural annotation	PF12643, MF_01020, NF001611, COG0140	NA	NA
UHGV-1492868_37	PHROG	phrog_21331	NA	unknown function
UHGV-1492868_37	UniRef90	UniRef90_UPI0010F86706	peptidase	NA
UHGV-1492868_43	PHROG	phrog_22740	NA	unknown function
UHGV-1492868_43	eggNOG-mapper	479437.Elen_2611	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-1492868_43	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-1492868_43	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-1492868_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1492868_44	UniRef90	UniRef90_UPI0018C32F08	permease	NA
UHGV-1492868_45	PHROG	phrog_908	NA	unknown function
UHGV-1492868_45	eggNOG-mapper	1692.BMAGN_1534	NA	NA
UHGV-1492868_45	Structural annotation	TIGR02043	NA	NA
UHGV-1492868_47	PHROG	phrog_16160	NA	unknown function
UHGV-1492868_47	eggNOG-mapper	479431.Namu_0337	NA	NA
UHGV-1492868_47	Pfam	PF20223	NA	DUF6582
UHGV-1492868_48	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1492868_48	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1492868_48	UniRef90	UniRef90_E0Q7E2	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1492868_48	eggNOG-mapper	1304888.ATWF01000001_gene726	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1492868_48	Pfam	PF00692	dUTPase	dUTPase
UHGV-1492868_48	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-1492868_48	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1492868_48	HAMAP	MF_00116	Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]	NA
UHGV-1492868_48	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1492868_51	eggNOG-mapper	1435051.BMOU_1230	NA	NA
UHGV-1492868_60	UniRef90	UniRef90_E0Q7D3	DNA-binding helix-turn-helix protein	NA
UHGV-1492868_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1492868_61	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1492868_61	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1492868_61	UniRef90	UniRef90_E0Q7D2	HNH endonuclease domain protein	NA
UHGV-1492868_61	eggNOG-mapper	35760.BCHO_0845	HNH endonuclease	NA
UHGV-1492868_61	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1492868_62	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-1492868_63	PHROG	phrog_226	minor tail protein	tail
UHGV-1492868_63	eggNOG-mapper	566461.SSFG_01019	NA	NA
UHGV-1492868_64	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1492868_64	UniRef90	UniRef90_UPI001F0F6B49	phage terminase family protein	NA
UHGV-1492868_64	eggNOG-mapper	35760.BCHO_0844	Terminase	NA
UHGV-1492868_64	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1492868_64	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1492868_65	PHROG	phrog_104	portal protein	head and packaging
UHGV-1492868_65	UniRef90	UniRef90_A0A5M9ZHZ0	Phage portal protein	NA
UHGV-1492868_65	eggNOG-mapper	1688.BCUN_1874	NA	NA
UHGV-1492868_65	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1492868_66	PHROG	phrog_36668	NA	unknown function
UHGV-1492868_66	UniRef90	UniRef90_W6EWN9	NA	NA
UHGV-1492868_66	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-1492868_66	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1492868_67	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-1492868_68	PHROG	phrog_3583	head decoration	head and packaging
UHGV-1492868_68	UniRef90	UniRef90_A0A261GA15	K structural protein	NA
UHGV-1492868_68	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-1492868_68	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-1492868_68	Structural annotation	PF02924	NA	NA
UHGV-1492868_69	PHROG	phrog_29	major head protein	head and packaging
UHGV-1492868_69	UniRef90	UniRef90_A0A2N0T1R7	Major capsid protein E	NA
UHGV-1492868_69	eggNOG-mapper	35760.BCHO_0839	Phage major capsid protein E	NA
UHGV-1492868_69	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1492868_69	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-1492868_70	PHROG	phrog_36776	NA	unknown function
UHGV-1492868_70	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-1492868_71	PHROG	phrog_25853	NA	unknown function
UHGV-1492868_71	UniRef90	UniRef90_A0A1X2Z7Z3	Thiamine biosynthesis protein ThiS	NA
UHGV-1492868_71	eggNOG-mapper	1692.BMAGN_1448	NA	NA
UHGV-1492868_71	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1492868_72	PHROG	phrog_32608	NA	unknown function
UHGV-1492868_72	Structural annotation	PF17395	NA	NA
UHGV-1492868_73	Structural annotation	PF12691	NA	NA
UHGV-1492868_74	PHROG	phrog_117	major tail protein	tail
UHGV-1492868_74	UniRef90	UniRef90_A0A1D7UNT0	Phage coat protein	NA
UHGV-1492868_74	eggNOG-mapper	1692.BMAGN_1451	NA	NA
UHGV-1492868_74	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1492868_75	PHROG	phrog_36579	NA	unknown function
UHGV-1492868_77	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1492868_77	UniRef90	UniRef90_A0A1X2Z117	Tail length tape measure protein	NA
UHGV-1492868_77	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-1492868_77	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-1492868_78	PHROG	phrog_5577	minor tail protein	tail
UHGV-1492868_78	UniRef90	UniRef90_W4N9I3	Phage tail domain protein	NA
UHGV-1492868_78	eggNOG-mapper	1435051.BMOU_0767	NA	NA