UHGV-1493596

Genome information

vOTU vOTU-019926

Genome length 25,677 bps

CDS count 32

Completeness 66.58% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-1493596
vOTU ID	vOTU-019926
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0186478
BioSample	SAMN00779630
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.65
Jumbo phage	No

Genome content
Genome length	25,677 bps
GC content	41.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.83%
Average CDS length	747.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1493596_2	PHROG	phrog_1129	holin	lysis
UHGV-1493596_2	UniRef90	UniRef90_UPI001C3AD115	Phage holin family protein	NA
UHGV-1493596_2	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-1493596_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1493596_2	Structural annotation	PF16079	NA	NA
UHGV-1493596_3	PHROG	phrog_4105	NA	unknown function
UHGV-1493596_3	eggNOG-mapper	1256908.HMPREF0373_00464	NA	NA
UHGV-1493596_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1493596_4	PHROG	phrog_435	endolysin	lysis
UHGV-1493596_4	UniRef90	UniRef90_A0A450CTD3	Cell wall hydrolase (Endolysin)	NA
UHGV-1493596_4	eggNOG-mapper	1283341.Q24LG3_BPPCD	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1493596_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1493596_4	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1493596_5	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1493596_5	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1493596_5	UniRef90	UniRef90_UPI0004826165	terminase small subunit	NA
UHGV-1493596_5	eggNOG-mapper	1120978.KB894087_gene429	Terminase small subunit	NA
UHGV-1493596_5	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1493596_5	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1493596_5	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1493596_6	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1493596_6	UniRef90	UniRef90_A0A416HJI3	HNH domain-containing protein	NA
UHGV-1493596_6	eggNOG-mapper	1157490.EL26_20750	HNH endonuclease	NA
UHGV-1493596_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1493596_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1493596_6	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1493596_7	PHROG	phrog_24267	NA	unknown function
UHGV-1493596_7	UniRef90	UniRef90_A0A173T301	Phage-related holin (Lysis protein)	NA
UHGV-1493596_7	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-1493596_7	COG	COG4926	Phage-related protein	NA
UHGV-1493596_8	PHROG	phrog_1066	NA	unknown function
UHGV-1493596_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1493596_9	UniRef90	UniRef90_UPI00156FA9A2	terminase large subunit	NA
UHGV-1493596_9	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-1493596_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1493596_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1493596_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1493596_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1493596_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-1493596_10	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-1493596_10	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-1493596_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1493596_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1493596_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1493596_11	KOfam	K06904	NA	NA
UHGV-1493596_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1493596_11	UniRef90	UniRef90_A0A415G8A3	HK97 family phage prohead protease	NA
UHGV-1493596_11	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-1493596_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1493596_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1493596_11	COG	COG3740	Phage head maturation protease	NA
UHGV-1493596_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1493596_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-1493596_12	UniRef90	UniRef90_UPI001D08CA0B	phage major capsid protein	NA
UHGV-1493596_12	eggNOG-mapper	1157490.EL26_20710	Phage capsid family	NA
UHGV-1493596_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1493596_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1493596_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1493596_12	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1493596_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1493596_16	PHROG	phrog_2566	NA	unknown function
UHGV-1493596_16	eggNOG-mapper	1294142.CINTURNW_1704	NA	NA
UHGV-1493596_17	UniRef90	UniRef90_R6Z5T8	Putative phage head-tail adaptor	NA
UHGV-1493596_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1493596_18	Structural annotation	TIGR01725	NA	NA
UHGV-1493596_19	Structural annotation	PF05657	NA	NA
UHGV-1493596_20	PHROG	phrog_88	major tail protein	tail
UHGV-1493596_20	UniRef90	UniRef90_A0A843HLZ4	Ig-like domain-containing protein	NA
UHGV-1493596_20	eggNOG-mapper	1403313.AXBR01000002_gene4319	phage major tail protein, phi13 family	NA
UHGV-1493596_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1493596_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1493596_22	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1493596_22	PHROG	phrog_5218	NA	unknown function
UHGV-1493596_22	UniRef90	UniRef90_UPI00156DBBA7	phage tail tape measure protein	NA
UHGV-1493596_22	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-1493596_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1493596_22	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1493596_22	Structural annotation	PF10145, TIGR01760, NF006545, COG5280	NA	NA
UHGV-1493596_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1493596_23	UniRef90	UniRef90_UPI0004805F22	phage tail family protein	NA
UHGV-1493596_23	eggNOG-mapper	665950.HMPREF1025_02008	Phage tail protein	NA
UHGV-1493596_23	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1493596_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-1493596_23	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1493596_24	PHROG	phrog_538	minor tail protein	tail
UHGV-1493596_24	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1493596_24	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1493596_24	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1493596_24	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1493596_25	PHROG	phrog_1220	head protein	head and packaging
UHGV-1493596_25	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-1493596_25	Structural annotation	PF16569, PF21567	NA	NA
UHGV-1493596_26	UniRef90	UniRef90_R6QDK2	HTH cro/C1-type domain-containing protein	NA
UHGV-1493596_26	eggNOG-mapper	411490.ANACAC_00697	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1493596_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1493596_26	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-1493596_28	KOfam	K14059	int; integrase	NA
UHGV-1493596_28	PHROG	phrog_1	integrase	integration and excision
UHGV-1493596_28	UniRef90	UniRef90_R6QF01	Phage integrase	NA
UHGV-1493596_28	eggNOG-mapper	1382358.JHVN01000005_gene3032	Phage integrase family	NA
UHGV-1493596_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1493596_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1493596_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1493596_28	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1493596_30	KOfam	K14059	int; integrase	NA
UHGV-1493596_30	PHROG	phrog_1	integrase	integration and excision
UHGV-1493596_30	UniRef90	UniRef90_A0A1M7MYP1	Site-specific recombinase XerD	NA
UHGV-1493596_30	eggNOG-mapper	1497679.EP56_03795	Belongs to the 'phage' integrase family	NA
UHGV-1493596_30	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1493596_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1493596_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1493596_30	Structural annotation	PF00589, PF14659, PF12286, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-1493596_31	PHROG	phrog_9170	NA	unknown function
UHGV-1493596_31	COG	COG3103	NA	NA
UHGV-1493596_32	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1493596_32	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-1493596_32	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1493596_32	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA