UHGV-1493793

Genome information

Genome length 25,605 bps

CDS count 37

Completeness 58.98% (medium-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-1493793
vOTU ID	vOTU-035941
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0186054
BioSample	SAMEA3449375
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.44
Jumbo phage	No

Genome content
Genome length	25,605 bps
GC content	46.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	88.83%
Average CDS length	618.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1493793_1	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-1493793_1	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-1493793_1	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-1493793_1	COG	COG5283	Phage-related tail protein	NA
UHGV-1493793_2	UniRef90	UniRef90_UPI001CE41D55	phage tail assembly protein	NA
UHGV-1493793_2	eggNOG-mapper	279714.FuraDRAFT_0286	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-1493793_2	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-1493793_2	Structural annotation	PF10109, COG4518	NA	NA
UHGV-1493793_3	PHROG	phrog_185	tail tube protein	tail
UHGV-1493793_3	UniRef90	UniRef90_A0A7U6GU04	Putative membrane protein	NA
UHGV-1493793_3	eggNOG-mapper	1124983.PFLCHA0_c12510	Phage tail tube protein	NA
UHGV-1493793_3	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-1493793_3	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-1493793_4	PHROG	phrog_165	tail sheath	tail
UHGV-1493793_4	UniRef90	UniRef90_A0A5B7ZKE4	Phage tail protein	NA
UHGV-1493793_4	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-1493793_4	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1493793_4	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1493793_4	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-1493793_4	Structural annotation	PF10758, COG4386	NA	NA
UHGV-1493793_5	PHROG	phrog_209	portal protein	head and packaging
UHGV-1493793_5	UniRef90	UniRef90_K7ZYZ8	FIG111678: IS, phage, Tn Transposon-related functions	NA
UHGV-1493793_5	eggNOG-mapper	1082705.JIBP01000010_gene163	NA	NA
UHGV-1493793_5	Structural annotation	PF09646	NA	NA
UHGV-1493793_6	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-1493793_6	Structural annotation	TIGR01725	NA	NA
UHGV-1493793_7	PHROG	phrog_25	head closure Hc1	connector
UHGV-1493793_7	UniRef90	UniRef90_UPI0007E2F3D8	phage head closure protein	NA
UHGV-1493793_7	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-1493793_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1493793_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1493793_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1493793_8	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1493793_8	UniRef90	UniRef90_A0A6L6YIV6	Phage gp6-like head-tail connector protein	NA
UHGV-1493793_8	eggNOG-mapper	575589.HMPREF0018_02853	Phage gp6-like head-tail connector protein	NA
UHGV-1493793_8	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1493793_8	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1493793_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1493793_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-1493793_10	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-1493793_10	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-1493793_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1493793_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1493793_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1493793_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1493793_11	KOfam	K06904	NA	NA
UHGV-1493793_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1493793_11	UniRef90	UniRef90_A0A6L6YJ61	HK97 family phage prohead protease	NA
UHGV-1493793_11	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-1493793_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1493793_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1493793_11	COG	COG3740	Phage head maturation protease	NA
UHGV-1493793_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1493793_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-1493793_12	UniRef90	UniRef90_A0A5B7ZK00	Phage portal protein	NA
UHGV-1493793_12	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-1493793_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1493793_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1493793_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1493793_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1493793_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1493793_13	UniRef90	UniRef90_UPI0006710F9A	terminase large subunit	NA
UHGV-1493793_13	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-1493793_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1493793_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1493793_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1493793_13	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1493793_14	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1493793_14	UniRef90	UniRef90_A0A6L6YGN1	Phage terminase small subunit P27 family	NA
UHGV-1493793_14	eggNOG-mapper	380358.XALC_2399	Phage terminase, small subunit	NA
UHGV-1493793_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1493793_14	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1493793_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1493793_16	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1493793_16	eggNOG-mapper	713587.THITH_01560	NA	NA
UHGV-1493793_16	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1493793_18	eggNOG-mapper	762966.HMPREF9439_01020	NA	NA
UHGV-1493793_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1493793_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1493793_19	UniRef90	UniRef90_D9Y6E1	IstB-like ATP-binding protein	NA
UHGV-1493793_19	eggNOG-mapper	469610.HMPREF0189_01096	IstB-like ATP binding protein	NA
UHGV-1493793_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1493793_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1493793_19	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-1493793_20	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1493793_20	UniRef90	UniRef90_UPI0012BB907D	helix-turn-helix domain-containing protein	NA
UHGV-1493793_20	eggNOG-mapper	762966.HMPREF9439_01017	NA	NA
UHGV-1493793_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1493793_20	Structural annotation	PF07106, MF_01177, TIGR01610, COG5529	NA	NA
UHGV-1493793_21	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-1493793_21	UniRef90	UniRef90_UPI00050A263E	YdaS family helix-turn-helix protein	NA
UHGV-1493793_21	eggNOG-mapper	1156919.QWC_10636	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-1493793_21	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-1493793_21	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-1493793_22	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1493793_22	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1493793_22	UniRef90	UniRef90_D9Y6L5	Peptidase S24-like protein	NA
UHGV-1493793_22	eggNOG-mapper	469610.HMPREF0189_01170	Peptidase S24-like	NA
UHGV-1493793_22	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1493793_22	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1493793_22	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1493793_23	COG	COG1933	Archaeal DNA polymerase II, large subunit	NA
UHGV-1493793_25	UniRef90	UniRef90_R5EI30	Putative transcriptional regulator	NA
UHGV-1493793_27	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1493793_27	UniRef90	UniRef90_D9Y6C9	YqaJ viral recombinase family protein	NA
UHGV-1493793_27	eggNOG-mapper	469610.HMPREF0189_01084	YqaJ-like viral recombinase domain	NA
UHGV-1493793_27	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1493793_27	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1493793_27	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1493793_27	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1493793_29	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1493793_29	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1493793_29	UniRef90	UniRef90_D9Y6K1	Recombinase, phage RecT family	NA
UHGV-1493793_29	eggNOG-mapper	469610.HMPREF0189_01156	RecT family	NA
UHGV-1493793_29	Pfam	PF03837	RecT family	RecT
UHGV-1493793_29	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1493793_29	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1493793_32	PHROG	phrog_1485	NA	unknown function
UHGV-1493793_32	UniRef90	UniRef90_UPI0019D50843	nucleotide modification associated domain-containing protein	NA
UHGV-1493793_32	eggNOG-mapper	1347392.CCEZ01000060_gene3286	NA	NA
UHGV-1493793_32	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-1493793_33	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-1493793_33	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1493793_33	UniRef90	UniRef90_UPI0019D69C77	DNA cytosine methyltransferase	NA
UHGV-1493793_33	eggNOG-mapper	205914.HS_1422	C-5 cytosine-specific DNA methylase	NA
UHGV-1493793_33	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1493793_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1493793_33	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1493793_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1493793_33	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-1493793_34	Structural annotation	PF05276	NA	NA
UHGV-1493793_37	KOfam	K14059	int; integrase	NA
UHGV-1493793_37	PHROG	phrog_1	integrase	integration and excision
UHGV-1493793_37	UniRef90	UniRef90_A0A3D4G8C1	Core-binding (CB) domain-containing protein	NA
UHGV-1493793_37	eggNOG-mapper	762966.HMPREF9439_01612	Belongs to the 'phage' integrase family	NA
UHGV-1493793_37	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-1493793_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1493793_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1493793_37	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA