UHGV-1494681

Genome information

Genome length 25,492 bps

CDS count 35

Completeness 60.96% (medium-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-1494681
vOTU ID	vOTU-033961
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0185339
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.77
Jumbo phage	No

Genome content
Genome length	25,492 bps
GC content	42.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	92.81%
Average CDS length	679.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1494681_1	PHROG	phrog_2742	endolysin	lysis
UHGV-1494681_1	UniRef90	UniRef90_A0A845KJG7	MurNAc-LAA domain-containing protein	NA
UHGV-1494681_1	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1494681_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1494681_1	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-1494681_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1494681_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG5492, COG0860	NA	NA
UHGV-1494681_2	PHROG	phrog_1129	holin	lysis
UHGV-1494681_2	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-1494681_2	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1494681_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1494681_2	Structural annotation	PF06946	NA	NA
UHGV-1494681_3	PHROG	phrog_1009	NA	unknown function
UHGV-1494681_3	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-1494681_3	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-1494681_4	eggNOG-mapper	641107.CDLVIII_1197	NA	NA
UHGV-1494681_5	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-1494681_5	PHROG	phrog_9478	minor tail protein	tail
UHGV-1494681_5	UniRef90	UniRef90_UPI001C0193FC	phage tail protein	NA
UHGV-1494681_5	eggNOG-mapper	543734.LCABL_13420	cellulase activity	NA
UHGV-1494681_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1494681_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1494681_5	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-1494681_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1494681_5	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1494681_5	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1494681_6	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1494681_6	UniRef90	UniRef90_UPI00156D6BD7	phage tail family protein	NA
UHGV-1494681_6	eggNOG-mapper	1235796.C815_00909	Phage tail protein	NA
UHGV-1494681_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1494681_6	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1494681_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-1494681_6	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-1494681_7	PHROG	phrog_1204	tail protein	tail
UHGV-1494681_7	UniRef90	UniRef90_UPI001896B0C6	tape measure protein	NA
UHGV-1494681_7	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-1494681_7	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1494681_7	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1494681_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1494681_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1494681_8	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-1494681_8	UniRef90	UniRef90_F0YWR6	NA	NA
UHGV-1494681_8	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-1494681_9	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1494681_9	UniRef90	UniRef90_UPI001D067B55	tail assembly chaperone	NA
UHGV-1494681_9	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-1494681_9	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1494681_9	Structural annotation	PF12363	NA	NA
UHGV-1494681_10	PHROG	phrog_238	major tail protein	tail
UHGV-1494681_10	UniRef90	UniRef90_A0A173YN47	Phage major tail protein, TP901-1 family	NA
UHGV-1494681_10	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-1494681_10	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1494681_10	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1494681_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1494681_11	PHROG	phrog_176	tail terminator	connector
UHGV-1494681_11	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-1494681_11	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-1494681_11	Structural annotation	PF11367	NA	NA
UHGV-1494681_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1494681_12	UniRef90	UniRef90_UPI00111124B6	HK97 gp10 family phage protein	NA
UHGV-1494681_12	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1494681_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1494681_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1494681_12	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1494681_13	PHROG	phrog_348	minor head protein	head and packaging
UHGV-1494681_13	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-1494681_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1494681_14	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1494681_14	UniRef90	UniRef90_A0A173ZES1	Phage gp6-like head-tail connector protein	NA
UHGV-1494681_14	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-1494681_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1494681_14	Structural annotation	PF05135	NA	NA
UHGV-1494681_15	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-1494681_15	UniRef90	UniRef90_UPI00189B7272	Rho termination protein	NA
UHGV-1494681_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-1494681_16	UniRef90	UniRef90_A0A173ZE35	S-l_SbsC_C domain-containing protein	NA
UHGV-1494681_16	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-1494681_16	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1494681_16	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1494681_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1494681_17	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-1494681_17	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-1494681_17	Pfam	PF14265	NA	DUF4355
UHGV-1494681_17	Structural annotation	PF14265	NA	NA
UHGV-1494681_18	PHROG	phrog_1048	NA	unknown function
UHGV-1494681_18	UniRef90	UniRef90_A0A395V4Z5	NA	NA
UHGV-1494681_18	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-1494681_18	Pfam	PF11195	NA	DUF2829
UHGV-1494681_18	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1494681_18	Structural annotation	PF11195	NA	NA
UHGV-1494681_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1494681_20	UniRef90	UniRef90_A0A173ZC01	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-1494681_20	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1494681_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1494681_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1494681_20	COG	COG2369	NA	NA
UHGV-1494681_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1494681_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-1494681_21	UniRef90	UniRef90_UPI001A9B67CD	phage portal protein	NA
UHGV-1494681_21	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-1494681_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1494681_21	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1494681_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1494681_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1494681_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1494681_22	UniRef90	UniRef90_UPI001897BF4F	PBSX family phage terminase large subunit	NA
UHGV-1494681_22	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-1494681_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1494681_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1494681_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1494681_22	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1494681_23	PHROG	phrog_1233	NA	unknown function
UHGV-1494681_23	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-1494681_23	Structural annotation	PF13058	NA	NA
UHGV-1494681_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1494681_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1494681_24	UniRef90	UniRef90_UPI00191E69A6	terminase small subunit	NA
UHGV-1494681_24	eggNOG-mapper	887325.HMPREF0381_0088	Terminase small subunit	NA
UHGV-1494681_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1494681_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1494681_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1494681_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1494681_26	UniRef90	UniRef90_UPI0018988F04	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1494681_26	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-1494681_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1494681_26	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-1494681_27	PHROG	phrog_7024	NA	unknown function
UHGV-1494681_27	eggNOG-mapper	431943.CKL_2655	NA	NA
UHGV-1494681_27	AcrCatalog	cluster_1398	NA	NA
UHGV-1494681_30	PHROG	phrog_3154	NA	unknown function
UHGV-1494681_30	UniRef90	UniRef90_UPI000CF8F0F1	NA	NA
UHGV-1494681_30	eggNOG-mapper	97139.C824_02654	NA	NA
UHGV-1494681_30	Pfam	PF07866	NA	DUF1653
UHGV-1494681_30	COG	COG4728	NA	NA
UHGV-1494681_31	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1494681_31	UniRef90	UniRef90_UPI00156F6AA5	methyltransferase domain-containing protein	NA
UHGV-1494681_31	eggNOG-mapper	1395513.P343_12775	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1494681_31	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1494681_31	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1494681_31	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1494681_31	Structural annotation	PF05148, MF_01057, NF011527, COG4123	NA	NA
UHGV-1494681_33	PHROG	phrog_3253	NA	unknown function
UHGV-1494681_33	eggNOG-mapper	411461.DORFOR_00013	NA	NA
UHGV-1494681_34	PHROG	phrog_1029	NA	unknown function
UHGV-1494681_34	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-1494681_34	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-1494681_34	Structural annotation	PF10065, COG5532	NA	NA