UHGV-1494715

Genome information

Genome length 77,913 bps

CDS count 88

Completeness 93.97% (high-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-1494715
vOTU ID	vOTU-073325
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0350364
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.86
Jumbo phage	No

Genome content
Genome length	77,913 bps
GC content	40.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	88
CDS density	86.54%
Average CDS length	770.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1494715_1	PHROG	phrog_25337	tail length tape measure protein	tail
UHGV-1494715_1	UniRef90	UniRef90_A0A2L2WS53	PhageMin_Tail domain-containing protein	NA
UHGV-1494715_1	eggNOG-mapper	1236504.HMPREF2132_01670	tail tape measure protein, TP901 family	NA
UHGV-1494715_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1494715_1	COG	COG5283	Phage-related tail protein	NA
UHGV-1494715_1	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1494715_4	PHROG	phrog_14787	NA	unknown function
UHGV-1494715_4	UniRef90	UniRef90_A0A2L2WND9	Primase C terminal 2	NA
UHGV-1494715_4	eggNOG-mapper	1236504.HMPREF2132_01765	Primase C terminal 2 (PriCT-2)	NA
UHGV-1494715_4	PADLOC	drt-cluster64	DRT	DRT
UHGV-1494715_4	Pfam	PF08800	BT4734-like, N-terminal domain	BT4734-like_N
UHGV-1494715_4	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1494715_4	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1494715_4	Structural annotation	PF08800, PF08707, NF040562	NA	NA
UHGV-1494715_6	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1494715_6	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1494715_6	UniRef90	UniRef90_A0A348JCQ4	Putative flavin-dependent thymidylate synthase	NA
UHGV-1494715_6	eggNOG-mapper	1236504.HMPREF2132_01775	thymidylate synthase (FAD) activity	NA
UHGV-1494715_6	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1494715_6	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1494715_6	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1494715_7	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1494715_7	UniRef90	UniRef90_A0A095Z6H0	MazG domain-containing protein	NA
UHGV-1494715_7	eggNOG-mapper	1236504.HMPREF2132_01780	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1494715_7	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1494715_7	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1494715_7	Structural annotation	TIGR03188, COG1694	NA	NA
UHGV-1494715_10	UniRef90	UniRef90_A0A095Z5K4	HU-HIG domain-containing protein	NA
UHGV-1494715_10	Pfam	PF18291	HU domain fused to wHTH, Ig, or Glycine-rich motif	HU-HIG
UHGV-1494715_10	Structural annotation	PF18291, MF_00380, TIGR01201, COG0776	NA	NA
UHGV-1494715_11	PHROG	phrog_11324	nucleotide kinase	other
UHGV-1494715_11	UniRef90	UniRef90_A0A7C9HD96	NA	NA
UHGV-1494715_11	eggNOG-mapper	1458670.W8NNR2_9CAUD	NA	NA
UHGV-1494715_11	Pfam	PF11753	NA	DUF3310
UHGV-1494715_14	Structural annotation	PF11550, COG5437	NA	NA
UHGV-1494715_15	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-1494715_15	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-1494715_15	UniRef90	UniRef90_A0A2L2WN07	Signal peptide peptidase SppA, 36K type	NA
UHGV-1494715_15	eggNOG-mapper	1236504.HMPREF2132_01855	serine-type peptidase activity	NA
UHGV-1494715_15	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-1494715_15	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-1494715_15	Structural annotation	PF01343, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-1494715_16	UniRef90	UniRef90_A0A3E4Z716	Flg_new_2 domain-containing protein	NA
UHGV-1494715_16	Structural annotation	PF05065, PF18998, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1494715_17	Structural annotation	TIGR01603, COG5437	NA	NA
UHGV-1494715_20	eggNOG-mapper	1002367.HMPREF0673_02207	NA	NA
UHGV-1494715_20	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1494715_21	Structural annotation	PF08863	NA	NA
UHGV-1494715_22	eggNOG-mapper	555500.I215_01903	NA	NA
UHGV-1494715_22	Structural annotation	PF05136, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-1494715_23	Pfam	PF20459	NA	DUF6712
UHGV-1494715_23	Structural annotation	PF20459	NA	NA
UHGV-1494715_26	eggNOG-mapper	1211844.CBLM010000016_gene1480	cellulase activity	NA
UHGV-1494715_26	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1494715_27	Pfam	PF00550	Phosphopantetheine attachment site	PP-binding
UHGV-1494715_29	PHROG	phrog_17422	NA	unknown function
UHGV-1494715_29	eggNOG-mapper	1287476.HMPREF1651_06170	cellulase activity	NA
UHGV-1494715_29	COG	COG4926	Phage-related protein	NA
UHGV-1494715_30	PHROG	phrog_33602	NA	unknown function
UHGV-1494715_31	PHROG	phrog_24896	NA	unknown function
UHGV-1494715_31	UniRef90	UniRef90_A0A1Y4IMG0	Cell surface protein	NA
UHGV-1494715_31	eggNOG-mapper	1227276.HMPREF9148_02474	NA	NA
UHGV-1494715_31	Structural annotation	PF08757, PF13385, PF16407, MF_01905, NF032891, COG3401	NA	NA
UHGV-1494715_32	PHROG	phrog_14959	NA	unknown function
UHGV-1494715_32	UniRef90	UniRef90_UPI000AC2FA26	leucine-rich repeat protein	NA
UHGV-1494715_32	eggNOG-mapper	1227276.HMPREF9148_02473	serine threonine protein kinase	NA
UHGV-1494715_32	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-1494715_33	UniRef90	UniRef90_A0A7C9HDV6	Leucine-rich repeat protein	NA
UHGV-1494715_33	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1494715_33	COG	COG0790	TPR repeat	NA
UHGV-1494715_33	Structural annotation	PF13306	NA	NA
UHGV-1494715_35	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1494715_35	PHROG	phrog_1	integrase	integration and excision
UHGV-1494715_35	UniRef90	UniRef90_A0A8B2AW39	Site-specific integrase	NA
UHGV-1494715_35	eggNOG-mapper	563008.HMPREF0665_02314	Belongs to the 'phage' integrase family	NA
UHGV-1494715_35	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1494715_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1494715_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1494715_35	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1494715_36	PHROG	phrog_17790	NA	unknown function
UHGV-1494715_36	eggNOG-mapper	585502.HMPREF0645_2489	NA	NA
UHGV-1494715_37	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1494715_37	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1494715_37	UniRef90	UniRef90_D1PZV3	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1494715_37	eggNOG-mapper	585502.HMPREF0645_2488	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1494715_37	PADLOC	MTase_II_00054	Type II methyltransferase	RM
UHGV-1494715_37	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1494715_37	COG	COG0338	DNA-adenine methylase	NA
UHGV-1494715_37	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-1494715_38	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-1494715_38	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1494715_38	UniRef90	UniRef90_A0A174QC79	Thymidylate synthase	NA
UHGV-1494715_38	eggNOG-mapper	1122989.KB898597_gene825	NA	NA
UHGV-1494715_38	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-1494715_38	COG	COG0207	Thymidylate synthase	NA
UHGV-1494715_38	Structural annotation	PF00303, MF_00008, NF002497, COG0207	NA	NA
UHGV-1494715_39	UniRef90	UniRef90_A0A095Z5H1	NA	NA
UHGV-1494715_40	UniRef90	UniRef90_A0A6H0KQV2	Helix-turn-helix transcriptional regulator	NA
UHGV-1494715_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1494715_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1494715_41	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1494715_45	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-1494715_45	UniRef90	UniRef90_UPI001D1569CA	antirestriction protein ArdA	NA
UHGV-1494715_45	eggNOG-mapper	743722.Sph21_3557	Antirestriction protein (ArdA)	NA
UHGV-1494715_45	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-1494715_45	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-1494715_45	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-1494715_47	UniRef90	UniRef90_A0A095Z5K4	HU-HIG domain-containing protein	NA
UHGV-1494715_47	Pfam	PF18291	HU domain fused to wHTH, Ig, or Glycine-rich motif	HU-HIG
UHGV-1494715_47	Structural annotation	PF18291, MF_00380, TIGR01201, COG0776	NA	NA
UHGV-1494715_51	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1494715_51	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1494715_51	UniRef90	UniRef90_A0A095Z6L5	AAA_31 domain-containing protein	NA
UHGV-1494715_51	eggNOG-mapper	1236504.HMPREF2132_02105	CobQ CobB MinD ParA nucleotide binding domain	NA
UHGV-1494715_51	Pfam	PF13614	AAA domain	AAA_31
UHGV-1494715_51	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1494715_51	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1494715_52	Structural annotation	PF07878, COG3905	NA	NA
UHGV-1494715_53	UniRef90	UniRef90_A0A096AGU1	Rep_3 domain-containing protein	NA
UHGV-1494715_53	eggNOG-mapper	1122981.AUME01000008_gene1231	Initiator RepB protein	NA
UHGV-1494715_53	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1494715_53	Structural annotation	PF20964, PF01051, NF038290, COG5527	NA	NA
UHGV-1494715_55	Structural annotation	NF041951, COG3655	NA	NA
UHGV-1494715_58	PHROG	phrog_255	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1494715_58	UniRef90	UniRef90_A0A095Z5C3	NA	NA
UHGV-1494715_58	eggNOG-mapper	1236504.HMPREF2132_01690	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-1494715_58	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-1494715_58	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1494715_58	Structural annotation	PF16473, MF_00157, TIGR01298, COG5018	NA	NA
UHGV-1494715_59	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1494715_59	UniRef90	UniRef90_UPI001C5FAD45	DNA adenine methylase	NA
UHGV-1494715_59	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1494715_59	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1494715_59	Structural annotation	NF008152, COG0338	NA	NA
UHGV-1494715_61	UniRef90	UniRef90_A0A096AGU9	FHA domain-containing protein	NA
UHGV-1494715_61	eggNOG-mapper	1236504.HMPREF2132_01700	DNA primase activity	NA
UHGV-1494715_61	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1494715_61	Structural annotation	PF05272, PF01807, MF_00974, MF_00016, NF005477, COG3378, COG0358	NA	NA
UHGV-1494715_63	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1494715_63	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-1494715_63	UniRef90	UniRef90_A0A0H5PZV9	DNA_pol3_beta_3 domain-containing protein	NA
UHGV-1494715_63	eggNOG-mapper	1236504.HMPREF2132_01710	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-1494715_63	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-1494715_63	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-1494715_63	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-1494715_63	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-1494715_63	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1494715_63	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1494715_70	UniRef90	UniRef90_UPI001C5CF12F	NA	NA
UHGV-1494715_70	Pfam	PF16225	NA	DUF4884
UHGV-1494715_70	Structural annotation	PF16225	NA	NA
UHGV-1494715_71	Pfam	PF17302	NA	DUF5351
UHGV-1494715_72	PHROG	phrog_8684	NA	unknown function
UHGV-1494715_72	UniRef90	UniRef90_U2JJ77	YopX domain-containing protein	NA
UHGV-1494715_72	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-1494715_72	Pfam	PF09643	YopX protein	YopX
UHGV-1494715_72	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1494715_73	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1494715_73	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1494715_73	UniRef90	UniRef90_U2KZ09	Cytosine-specific methyltransferase	NA
UHGV-1494715_73	eggNOG-mapper	1227276.HMPREF9148_00139	DNA methylase	NA
UHGV-1494715_73	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1494715_73	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1494715_73	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1494715_73	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1494715_73	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1494715_74	PHROG	phrog_874	NA	unknown function
UHGV-1494715_74	eggNOG-mapper	1227276.HMPREF9148_00140	NA	NA
UHGV-1494715_74	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1494715_75	PHROG	phrog_1229	NA	unknown function
UHGV-1494715_75	eggNOG-mapper	585502.HMPREF0645_2619	NA	NA
UHGV-1494715_77	UniRef90	UniRef90_A0A069QI17	Acetyltransferase, GNAT family	NA
UHGV-1494715_77	eggNOG-mapper	1122991.BAIZ01000025_gene1862	NA	NA
UHGV-1494715_78	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1494715_78	UniRef90	UniRef90_UPI001D144A00	NA	NA
UHGV-1494715_78	eggNOG-mapper	1236504.HMPREF2132_11460	NA	NA
UHGV-1494715_78	Pfam	PF14359	NA	DUF4406
UHGV-1494715_78	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-1494715_80	Structural annotation	PF20765	NA	NA
UHGV-1494715_86	UniRef90	UniRef90_A0A2T4TB45	MerR family transcriptional regulator	NA
UHGV-1494715_88	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1494715_88	PHROG	phrog_822	amidase	lysis
UHGV-1494715_88	UniRef90	UniRef90_F8NB41	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-1494715_88	eggNOG-mapper	688246.Premu_0377	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1494715_88	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1494715_88	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1494715_88	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA