UHGV-1494772

Genome information

Genome length 48,709 bps

CDS count 46

Completeness 53.65% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-1494772
vOTU ID	vOTU-015086
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0306507
BioSample	SAMN00792103
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	53.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.56
Jumbo phage	No

Genome content
Genome length	48,709 bps
GC content	43.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.66%
Average CDS length	1,006.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1494772_1	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-1494772_1	UniRef90	UniRef90_A0A1Q6GD04	Helicase C-terminal domain-containing protein	NA
UHGV-1494772_1	eggNOG-mapper	679191.HMPREF9018_0456	helicase superfamily c-terminal domain	NA
UHGV-1494772_1	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1494772_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1494772_1	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1494772_3	KOfam	K09511	DNAJB5; DnaJ homolog subfamily B member 5	NA
UHGV-1494772_3	PHROG	phrog_14336	NA	unknown function
UHGV-1494772_3	UniRef90	UniRef90_A0A6I2NHH7	DnaJ domain-containing protein	NA
UHGV-1494772_3	eggNOG-mapper	1286632.P278_19630	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	NA
UHGV-1494772_3	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-1494772_3	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-1494772_3	Structural annotation	PF00226, PF20545, MF_00682, NF010870, COG2214, COG3126	NA	NA
UHGV-1494772_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1494772_4	UniRef90	UniRef90_UPI0013E9F59E	terminase	NA
UHGV-1494772_4	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-1494772_4	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1494772_4	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1494772_5	UniRef90	UniRef90_A0A173VHX4	Rhomboid domain-containing protein	NA
UHGV-1494772_5	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-1494772_5	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-1494772_7	PHROG	phrog_22323	NA	unknown function
UHGV-1494772_7	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-1494772_8	PHROG	phrog_26635	NA	unknown function
UHGV-1494772_8	UniRef90	UniRef90_R7DGV7	BIG2 domain-containing protein	NA
UHGV-1494772_8	eggNOG-mapper	742817.HMPREF9449_01785	NA	NA
UHGV-1494772_8	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1494772_10	PHROG	phrog_22135	NA	unknown function
UHGV-1494772_10	Structural annotation	PF17212	NA	NA
UHGV-1494772_11	UniRef90	UniRef90_UPI001BDF6171	right-handed parallel beta-helix repeat-containing protein	NA
UHGV-1494772_11	eggNOG-mapper	462590.A9J4Y8_BPPYU	NA	NA
UHGV-1494772_13	UniRef90	UniRef90_A0A385DVA9	Putative C-type lectin	NA
UHGV-1494772_13	eggNOG-mapper	1151292.QEW_0665	NA	NA
UHGV-1494772_14	PHROG	phrog_697	structural protein	head and packaging
UHGV-1494772_14	UniRef90	UniRef90_A0A173VIN9	Mtd_N domain-containing protein	NA
UHGV-1494772_14	eggNOG-mapper	679935.Alfi_2724	NA	NA
UHGV-1494772_14	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1494772_15	PHROG	phrog_19976	tail assembly protein	tail
UHGV-1494772_15	eggNOG-mapper	679935.Alfi_2724	NA	NA
UHGV-1494772_15	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1494772_16	PHROG	phrog_15037	NA	unknown function
UHGV-1494772_16	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-1494772_16	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-1494772_16	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1494772_17	PHROG	phrog_873	endolysin	head and packaging
UHGV-1494772_17	UniRef90	UniRef90_A0A7K0H713	Structural protein P5	NA
UHGV-1494772_17	eggNOG-mapper	1235803.C825_05325	NA	NA
UHGV-1494772_18	PHROG	phrog_32732	NA	unknown function
UHGV-1494772_18	UniRef90	UniRef90_R6YL95	Conserved domain protein	NA
UHGV-1494772_18	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-1494772_18	dbAPIS	APIS052	NA	NA
UHGV-1494772_18	Structural annotation	PF10458	NA	NA
UHGV-1494772_19	PHROG	phrog_26448	NA	unknown function
UHGV-1494772_19	eggNOG-mapper	1235803.C825_05324	NA	NA
UHGV-1494772_19	Pfam	PF20647	NA	DUF6808
UHGV-1494772_19	Structural annotation	PF20647	NA	NA
UHGV-1494772_20	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1494772_20	UniRef90	UniRef90_A0A7K0H7M1	GIY-YIG domain-containing protein	NA
UHGV-1494772_20	eggNOG-mapper	509191.AEDB02000075_gene2787	NUMOD3 motif (2 copies)	NA
UHGV-1494772_20	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1494772_20	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-1494772_20	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1494772_20	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-1494772_21	PHROG	phrog_156	portal protein	head and packaging
UHGV-1494772_21	eggNOG-mapper	679191.HMPREF9018_0455	NA	NA
UHGV-1494772_21	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1494772_26	PHROG	phrog_32516	NA	unknown function
UHGV-1494772_26	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-1494772_26	Structural annotation	PF11134, COG3292	NA	NA
UHGV-1494772_29	PHROG	phrog_9236	pyrophosphatase	other
UHGV-1494772_29	eggNOG-mapper	1347393.HG726021_gene400	NA	NA
UHGV-1494772_29	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1494772_32	PHROG	phrog_28300	NA	unknown function
UHGV-1494772_32	Structural annotation	PF13066, COG4014	NA	NA
UHGV-1494772_33	PHROG	phrog_28609	NA	unknown function
UHGV-1494772_33	eggNOG-mapper	357276.EL88_11370	NA	NA
UHGV-1494772_34	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1494772_34	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1494772_34	UniRef90	UniRef90_A6LAB7	Methyltransferase	NA
UHGV-1494772_34	eggNOG-mapper	435591.BDI_0862	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1494772_34	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-1494772_34	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1494772_34	COG	COG0338	DNA-adenine methylase	NA
UHGV-1494772_34	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-1494772_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1494772_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1494772_35	UniRef90	UniRef90_A0A173VIY1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1494772_35	eggNOG-mapper	742727.HMPREF9447_01720	C-5 cytosine-specific DNA methylase	NA
UHGV-1494772_35	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-1494772_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1494772_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1494772_35	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-1494772_36	eggNOG-mapper	761193.Runsl_1221	NA	NA
UHGV-1494772_36	Structural annotation	PF04266, MF_00684, NF003443, COG2411	NA	NA
UHGV-1494772_37	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1494772_37	UniRef90	UniRef90_A0A7K0H8A4	NA	NA
UHGV-1494772_37	eggNOG-mapper	357276.EL88_03065	COG NOG19076 non supervised orthologous group	NA
UHGV-1494772_37	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1494772_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1494772_37	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-1494772_38	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1494772_38	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1494772_38	UniRef90	UniRef90_A0A7K0H744	NA	NA
UHGV-1494772_38	eggNOG-mapper	547042.BACCOPRO_00878	NA	NA
UHGV-1494772_38	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1494772_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1494772_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1494772_39	UniRef90	UniRef90_A0A7K0H746	Acetyltransferase	NA
UHGV-1494772_39	eggNOG-mapper	1358423.N180_03020	NA	NA
UHGV-1494772_41	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1494772_41	eggNOG-mapper	457424.BFAG_02412	NA	NA
UHGV-1494772_42	PHROG	phrog_35807	NA	unknown function
UHGV-1494772_42	UniRef90	UniRef90_A0A7K0H7J2	RNA polymerase subunit sigma	NA
UHGV-1494772_42	eggNOG-mapper	435591.BDI_0856	RNA polymerase activity	NA
UHGV-1494772_42	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-1494772_42	Structural annotation	PF14902	NA	NA
UHGV-1494772_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1494772_43	eggNOG-mapper	1235788.C802_00052	NA	NA
UHGV-1494772_43	Structural annotation	NF007281	NA	NA
UHGV-1494772_44	KOfam	K12574	rnj; ribonuclease J [EC:3.1.-.-]	NA
UHGV-1494772_44	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1494772_44	UniRef90	UniRef90_A0A7K0H759	MBL fold metallo-hydrolase	NA
UHGV-1494772_44	eggNOG-mapper	457424.BFAG_02390	Metallo-beta-lactamase superfamily	NA
UHGV-1494772_44	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1494772_44	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1494772_45	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1494772_45	UniRef90	UniRef90_UPI001600306B	recombinase RecT	NA
UHGV-1494772_45	eggNOG-mapper	457424.BFAG_02389	NA	NA
UHGV-1494772_45	Pfam	PF03837	RecT family	RecT
UHGV-1494772_45	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1494772_46	PHROG	phrog_21084	recombinase	other
UHGV-1494772_46	UniRef90	UniRef90_W4P4D3	Putative outer membrane protein	NA
UHGV-1494772_46	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-1494772_46	COG	COG1196	Chromosome segregation ATPase Smc	NA