UHGV-1495562

Genome information

vOTU vOTU-012018

Genome length 45,535 bps

CDS count 79

Completeness 99.90% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-1495562
vOTU ID	vOTU-012018
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0295635
BioSample	SAMEA4545388
Country	Kazakhstan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.39
Jumbo phage	No

Genome content
Genome length	45,535 bps
GC content	36.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	88.92%
Average CDS length	514.94 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1495562_1	KOfam	K14059	int; integrase	NA
UHGV-1495562_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1495562_1	UniRef90	UniRef90_A0A173TZS3	Integrase	NA
UHGV-1495562_1	eggNOG-mapper	1235798.C817_05483	Phage integrase family	NA
UHGV-1495562_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1495562_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1495562_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1495562_2	PHROG	phrog_10059	NA	unknown function
UHGV-1495562_2	UniRef90	UniRef90_UPI0011CB643E	Ig-like domain-containing protein	NA
UHGV-1495562_2	eggNOG-mapper	445971.ANASTE_01207	Bacterial Ig-like domain (group 2)	NA
UHGV-1495562_2	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1495562_2	Structural annotation	PF02368, NF005261, COG5492	NA	NA
UHGV-1495562_3	PHROG	phrog_87	metallo-protease	other
UHGV-1495562_3	UniRef90	UniRef90_A0A417V5H7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1495562_3	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-1495562_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1495562_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1495562_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1495562_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1495562_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1495562_4	UniRef90	UniRef90_A0A417V5F8	XRE family transcriptional regulator	NA
UHGV-1495562_4	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-1495562_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1495562_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1495562_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1495562_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1495562_5	UniRef90	UniRef90_UPI00156EC996	helix-turn-helix domain-containing protein	NA
UHGV-1495562_5	eggNOG-mapper	1201292.DR75_1541	Helix-turn-helix XRE-family like proteins	NA
UHGV-1495562_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1495562_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1495562_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1495562_8	AcrCatalog	cluster_17974	NA	NA
UHGV-1495562_9	PHROG	phrog_36464	NA	unknown function
UHGV-1495562_9	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-1495562_9	Structural annotation	PF09035	NA	NA
UHGV-1495562_13	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1495562_13	UniRef90	UniRef90_A0A417V5L9	Recombinase	NA
UHGV-1495562_13	eggNOG-mapper	201846.Q6JM07_9CAUD	ERF superfamily	NA
UHGV-1495562_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-1495562_13	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1495562_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1495562_14	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-1495562_14	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-1495562_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1495562_15	PHROG	phrog_7566	NA	unknown function
UHGV-1495562_15	UniRef90	UniRef90_A0A417V5I7	Phosphoenolpyruvate carboxykinase	NA
UHGV-1495562_15	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-1495562_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1495562_16	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1495562_16	UniRef90	UniRef90_A0A417V5H0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1495562_16	eggNOG-mapper	1158604.I591_01786	Endodeoxyribonuclease RusA	NA
UHGV-1495562_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1495562_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1495562_16	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1495562_17	PHROG	phrog_16304	NA	unknown function
UHGV-1495562_17	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-1495562_17	Structural annotation	PF10771, MF_01177, TIGR01610, COG5529	NA	NA
UHGV-1495562_18	PHROG	phrog_1123	NA	unknown function
UHGV-1495562_18	UniRef90	UniRef90_A0A6N9P096	DNA gyrase	NA
UHGV-1495562_18	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-1495562_18	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-1495562_19	UniRef90	UniRef90_UPI001BA881F1	transposase	NA
UHGV-1495562_19	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1495562_19	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-1495562_22	eggNOG-mapper	1121871.AUAT01000002_gene1365	NA	NA
UHGV-1495562_30	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-1495562_31	Structural annotation	PF14084	NA	NA
UHGV-1495562_34	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1495562_34	UniRef90	UniRef90_A0A173TWB1	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1495562_34	eggNOG-mapper	445335.CBN_1365	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1495562_34	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1495562_34	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1495562_34	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-1495562_42	UniRef90	UniRef90_A0A6N3B9I3	HTH cro/C1-type domain-containing protein	NA
UHGV-1495562_42	eggNOG-mapper	742733.HMPREF9469_02677	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1495562_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1495562_43	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-1495562_44	PHROG	phrog_15863	NA	unknown function
UHGV-1495562_44	UniRef90	UniRef90_A0A417UWU3	J domain-containing protein	NA
UHGV-1495562_44	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-1495562_44	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-1495562_46	UniRef90	UniRef90_A0A173TX46	HTH cro/C1-type domain-containing protein	NA
UHGV-1495562_46	eggNOG-mapper	397291.C804_01058	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1495562_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1495562_46	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-1495562_48	PHROG	phrog_33130	NA	unknown function
UHGV-1495562_48	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-1495562_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1495562_49	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1495562_49	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-1495562_49	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1495562_49	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1495562_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1495562_49	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1495562_49	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1495562_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-1495562_49	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1495562_51	PHROG	phrog_533	portal protein	head and packaging
UHGV-1495562_51	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-1495562_51	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1495562_51	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1495562_53	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1495562_53	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-1495562_53	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-1495562_53	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1495562_53	COG	COG2369	NA	NA
UHGV-1495562_53	Structural annotation	PF06152	NA	NA
UHGV-1495562_54	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-1495562_54	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-1495562_55	PHROG	phrog_1048	NA	unknown function
UHGV-1495562_55	UniRef90	UniRef90_UPI00156DCDC3	NA	NA
UHGV-1495562_55	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-1495562_55	Pfam	PF11195	NA	DUF2829
UHGV-1495562_55	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1495562_55	Structural annotation	PF11195	NA	NA
UHGV-1495562_56	PHROG	phrog_21718	NA	unknown function
UHGV-1495562_56	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-1495562_58	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-1495562_59	PHROG	phrog_20016	NA	unknown function
UHGV-1495562_59	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-1495562_59	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1495562_59	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1495562_60	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-1495562_62	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1495562_62	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-1495562_62	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-1495562_63	PHROG	phrog_247	major head protein	head and packaging
UHGV-1495562_63	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-1495562_63	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-1495562_63	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1495562_64	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1495562_64	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-1495562_65	PHROG	phrog_3366	NA	unknown function
UHGV-1495562_65	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-1495562_65	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1495562_66	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1495562_66	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-1495562_66	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1495562_66	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1495562_66	Structural annotation	PF11114	NA	NA
UHGV-1495562_67	PHROG	phrog_3266	tail completion	connector
UHGV-1495562_67	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-1495562_67	Structural annotation	PF12691	NA	NA
UHGV-1495562_68	PHROG	phrog_3099	NA	unknown function
UHGV-1495562_68	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-1495562_68	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1495562_69	PHROG	phrog_11299	NA	unknown function
UHGV-1495562_69	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-1495562_69	Structural annotation	PF10666	NA	NA
UHGV-1495562_70	PHROG	phrog_706	NA	unknown function
UHGV-1495562_70	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-1495562_70	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-1495562_70	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1495562_70	Structural annotation	PF06854	NA	NA
UHGV-1495562_71	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1495562_71	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-1495562_71	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-1495562_71	COG	COG5412	Phage-related protein	NA
UHGV-1495562_72	PHROG	phrog_1194	NA	unknown function
UHGV-1495562_72	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1495562_73	PHROG	phrog_6616	tail protein	tail
UHGV-1495562_73	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-1495562_73	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-1495562_73	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-1495562_74	PHROG	phrog_18444	NA	unknown function
UHGV-1495562_74	UniRef90	UniRef90_A0A4U9RQD7	Peptide chain release factor 2	NA
UHGV-1495562_76	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1495562_76	PHROG	phrog_5240	tail fiber protein	tail
UHGV-1495562_76	UniRef90	UniRef90_A0A0U4JWX9	GDSL-like lipase/acylhydrolase	NA
UHGV-1495562_76	eggNOG-mapper	86416.Clopa_3364	lipolytic protein G-D-S-L family	NA
UHGV-1495562_76	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1495562_76	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1495562_77	PHROG	phrog_962	holin	lysis
UHGV-1495562_77	UniRef90	UniRef90_UPI0015714279	phage holin	NA
UHGV-1495562_77	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-1495562_77	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1495562_77	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1495562_77	COG	COG5546	NA	NA
UHGV-1495562_77	Structural annotation	PF04531, TIGR01598, COG5546	NA	NA
UHGV-1495562_78	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-1495562_78	PHROG	phrog_670	endolysin	lysis
UHGV-1495562_78	UniRef90	UniRef90_UPI00156EE520	amidase	NA
UHGV-1495562_78	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-1495562_78	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1495562_78	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1495562_78	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1495562_78	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA