UHGV-1495725

Genome information

Genome length 45,377 bps

CDS count 62

Completeness 97.36% (high-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-1495725
vOTU ID	vOTU-013605
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0294948
BioSample	SAMN02333956
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.78
Jumbo phage	No

Genome content
Genome length	45,377 bps
GC content	45.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.90%
Average CDS length	669.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1495725_1	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-1495725_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1495725_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1495725_7	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-1495725_7	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1495725_7	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1495725_7	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-1495725_9	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-1495725_9	Structural annotation	PF21277	NA	NA
UHGV-1495725_11	PHROG	phrog_4105	NA	unknown function
UHGV-1495725_11	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-1495725_12	PHROG	phrog_1807	tail fiber protein	tail
UHGV-1495725_12	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-1495725_12	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-1495725_12	Pfam	PF14301	NA	DUF4376
UHGV-1495725_12	Structural annotation	PF14301	NA	NA
UHGV-1495725_13	PHROG	phrog_19618	tail collar protein	tail
UHGV-1495725_13	UniRef90	UniRef90_A0A354WRB2	Collar domain-containing protein	NA
UHGV-1495725_13	eggNOG-mapper	556269.ACDQ01000009_gene1944	Phage Tail Collar Domain	NA
UHGV-1495725_13	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1495725_13	COG	COG4675	Phage tail collar domain	NA
UHGV-1495725_13	Structural annotation	PF07484, COG4675	NA	NA
UHGV-1495725_14	PHROG	phrog_13893	tail protein	tail
UHGV-1495725_14	eggNOG-mapper	2754.EH55_08460	NA	NA
UHGV-1495725_14	Structural annotation	PF03906	NA	NA
UHGV-1495725_15	PHROG	phrog_9880	NA	unknown function
UHGV-1495725_15	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-1495725_15	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-1495725_15	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1495725_16	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-1495725_16	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1495725_16	Structural annotation	PF01464, COG0741	NA	NA
UHGV-1495725_17	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1495725_17	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-1495725_17	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-1495725_18	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1495725_18	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-1495725_19	PHROG	phrog_376	tail protein	tail
UHGV-1495725_19	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-1495725_19	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-1495725_19	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1495725_20	PHROG	phrog_394	tail protein	tail
UHGV-1495725_20	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-1495725_20	eggNOG-mapper	557598.LHK_01545	NA	NA
UHGV-1495725_20	Structural annotation	PF17212	NA	NA
UHGV-1495725_21	PHROG	phrog_427	NA	unknown function
UHGV-1495725_21	Structural annotation	PF21190	NA	NA
UHGV-1495725_22	PHROG	phrog_212	major head protein	head and packaging
UHGV-1495725_22	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-1495725_22	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-1495725_22	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1495725_22	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1495725_23	PHROG	phrog_458	protease	other
UHGV-1495725_23	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-1495725_24	PHROG	phrog_528	NA	unknown function
UHGV-1495725_24	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-1495725_25	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1495725_25	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-1495725_25	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-1495725_25	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1495725_25	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1495725_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1495725_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1495725_27	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-1495725_27	eggNOG-mapper	568816.Acin_1836	Terminase RNaseH-like domain	NA
UHGV-1495725_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1495725_27	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1495725_27	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1495725_29	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-1495725_30	UniRef90	UniRef90_UPI00103300F2	helix-turn-helix domain-containing protein	NA
UHGV-1495725_30	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-1495725_30	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-1495725_31	Structural annotation	PF13983	NA	NA
UHGV-1495725_33	PHROG	phrog_15863	NA	unknown function
UHGV-1495725_33	UniRef90	UniRef90_R6WLL6	Cytochrome c domain-containing protein	NA
UHGV-1495725_33	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-1495725_33	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-1495725_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1495725_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1495725_39	UniRef90	UniRef90_R6WGR4	Single-stranded DNA-binding protein	NA
UHGV-1495725_39	eggNOG-mapper	1280954.HPO_10557	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1495725_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1495725_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1495725_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1495725_39	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-1495725_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1495725_40	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1495725_40	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1495725_40	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-1495725_40	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1495725_40	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1495725_40	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1495725_45	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1495725_45	PHROG	phrog_923	NA	unknown function
UHGV-1495725_45	UniRef90	UniRef90_A0A412X6I1	Pentapeptide repeat-containing protein	NA
UHGV-1495725_45	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1495725_45	Structural annotation	PF13599, NF011744	NA	NA
UHGV-1495725_46	PHROG	phrog_3878	NA	unknown function
UHGV-1495725_46	Structural annotation	PF19607	NA	NA
UHGV-1495725_49	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1495725_49	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1495725_49	UniRef90	UniRef90_A0A1Q6RAH0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1495725_49	eggNOG-mapper	203119.Cthe_1728	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1495725_49	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1495725_49	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1495725_49	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1495725_49	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1495725_49	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1495725_52	PHROG	phrog_11769	NA	unknown function
UHGV-1495725_52	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-1495725_52	eggNOG-mapper	1052684.PPM_2791	sequence-specific DNA binding	NA
UHGV-1495725_52	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1495725_52	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1495725_52	COG	COG1522	DNA-binding transcriptional regulator, Lrp family	NA
UHGV-1495725_52	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-1495725_53	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1495725_53	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1495725_53	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-1495725_53	eggNOG-mapper	525257.HMPREF0204_11404	RecT family	NA
UHGV-1495725_53	Pfam	PF03837	RecT family	RecT
UHGV-1495725_53	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1495725_53	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1495725_53	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1495725_54	UniRef90	UniRef90_R6WLK2	Conserved domain protein	NA
UHGV-1495725_54	eggNOG-mapper	457421.CBFG_03225	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1495725_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1495725_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1495725_54	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1495725_55	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1495725_55	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-1495725_55	eggNOG-mapper	706434.HMPREF9429_00770	YqaJ viral recombinase family protein	NA
UHGV-1495725_55	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1495725_55	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1495725_55	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1495725_55	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1495725_57	PHROG	phrog_14367	NA	unknown function
UHGV-1495725_57	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-1495725_57	Pfam	PF01476	LysM domain	LysM
UHGV-1495725_57	COG	COG1388	LysM repeat	NA
UHGV-1495725_57	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-1495725_58	Structural annotation	NF041909	NA	NA
UHGV-1495725_59	PHROG	phrog_6058	NA	unknown function
UHGV-1495725_59	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-1495725_59	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-1495725_59	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1495725_62	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1495725_62	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1495725_62	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-1495725_62	eggNOG-mapper	1151292.QEW_0725	DNA-binding helix-turn-helix protein	NA
UHGV-1495725_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1495725_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1495725_62	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA