UHGV-1495892

Genome information

Genome length 47,005 bps

CDS count 77

Completeness 82.24% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-1495892
vOTU ID	vOTU-017108
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0301308
BioSample	SAMEA2467006
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.82
Jumbo phage	No

Genome content
Genome length	47,005 bps
GC content	36.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	89.29%
Average CDS length	546.90 bps
tRNA count	2
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1495892_1	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-1495892_1	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-1495892_1	Structural annotation	PF16677	NA	NA
UHGV-1495892_2	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1495892_2	UniRef90	UniRef90_R6C0D1	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1495892_2	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1495892_2	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1495892_2	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1495892_2	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-1495892_3	PHROG	phrog_236	nucleotide kinase	other
UHGV-1495892_3	UniRef90	UniRef90_A0A8D9PG35	Nucelotide kinase	NA
UHGV-1495892_3	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-1495892_3	Pfam	PF11753	NA	DUF3310
UHGV-1495892_3	Structural annotation	PF11753	NA	NA
UHGV-1495892_4	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1495892_4	eggNOG-mapper	1122172.KB890259_gene1441	NA	NA
UHGV-1495892_4	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1495892_4	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1495892_4	Structural annotation	NF040939, COG3355	NA	NA
UHGV-1495892_6	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-1495892_6	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-1495892_6	Structural annotation	PF05225, COG2886	NA	NA
UHGV-1495892_8	Structural annotation	PF04466	NA	NA
UHGV-1495892_9	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-1495892_12	UniRef90	UniRef90_UPI00164B0B2F	NA	NA
UHGV-1495892_14	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1495892_14	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-1495892_14	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-1495892_14	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1495892_14	COG	COG5410	NA	NA
UHGV-1495892_14	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1495892_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1495892_15	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-1495892_15	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-1495892_15	Pfam	PF07374	NA	DUF1492
UHGV-1495892_15	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1495892_15	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1495892_16	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-1495892_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-1495892_17	UniRef90	UniRef90_R7BGE4	SPP1 family phage portal protein	NA
UHGV-1495892_17	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1495892_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1495892_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1495892_18	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-1495892_19	PHROG	phrog_909	major head protein	head and packaging
UHGV-1495892_19	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-1495892_20	PHROG	phrog_29	major head protein	head and packaging
UHGV-1495892_20	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-1495892_20	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-1495892_20	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1495892_20	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1495892_21	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-1495892_21	Structural annotation	PF21169	NA	NA
UHGV-1495892_22	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1495892_23	PHROG	phrog_1863	NA	unknown function
UHGV-1495892_23	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-1495892_24	PHROG	phrog_1129	holin	lysis
UHGV-1495892_24	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-1495892_24	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1495892_24	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1495892_24	Structural annotation	PF06946	NA	NA
UHGV-1495892_25	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1495892_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1495892_27	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-1495892_28	Structural annotation	PF05657	NA	NA
UHGV-1495892_29	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-1495892_29	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1495892_31	PHROG	phrog_36112	NA	unknown function
UHGV-1495892_31	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-1495892_31	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-1495892_31	Structural annotation	PF16478	NA	NA
UHGV-1495892_33	PHROG	phrog_28918	NA	unknown function
UHGV-1495892_33	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-1495892_33	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-1495892_33	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1495892_34	UniRef90	UniRef90_A0A8D9UIY0	NA	NA
UHGV-1495892_34	eggNOG-mapper	411468.CLOSCI_01239	NA	NA
UHGV-1495892_34	Pfam	PF16729	NA	DUF5067
UHGV-1495892_34	Structural annotation	PF16729, MF_00791, TIGR04087, COG2967	NA	NA
UHGV-1495892_35	UniRef90	UniRef90_UPI00174DD543	CopG family transcriptional regulator	NA
UHGV-1495892_35	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-1495892_36	Structural annotation	PF07875	NA	NA
UHGV-1495892_37	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1495892_37	UniRef90	UniRef90_A0A8D9PG17	Prophage antirepressor	NA
UHGV-1495892_37	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-1495892_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1495892_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1495892_37	COG	COG3617	Prophage antirepressor	NA
UHGV-1495892_37	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-1495892_38	PHROG	phrog_1194	NA	unknown function
UHGV-1495892_38	eggNOG-mapper	877414.ATWA01000001_gene917	NA	NA
UHGV-1495892_38	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1495892_39	PHROG	phrog_1401	NA	unknown function
UHGV-1495892_39	Structural annotation	PF07761	NA	NA
UHGV-1495892_40	PHROG	phrog_6616	tail protein	tail
UHGV-1495892_40	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-1495892_40	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-1495892_40	COG	COG4926	Phage-related protein	NA
UHGV-1495892_40	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-1495892_41	PHROG	phrog_2566	NA	unknown function
UHGV-1495892_43	KOfam	K07273	acm; lysozyme	NA
UHGV-1495892_43	PHROG	phrog_291	endolysin	lysis
UHGV-1495892_43	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-1495892_43	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-1495892_43	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1495892_43	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1495892_43	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-1495892_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1495892_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1495892_44	UniRef90	UniRef90_A0A8D9UIK2	HTH cro/C1-type domain-containing protein	NA
UHGV-1495892_44	eggNOG-mapper	445974.CLORAM_02966	Helix-turn-helix XRE-family like proteins	NA
UHGV-1495892_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1495892_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1495892_44	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-1495892_45	UniRef90	UniRef90_A0A8D9UIR6	DNA-binding transcriptional regulator	NA
UHGV-1495892_45	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-1495892_45	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1495892_46	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1495892_46	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-1495892_46	eggNOG-mapper	379501.A9CR56_BPMR1	DNA binding	NA
UHGV-1495892_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1495892_46	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1495892_46	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-1495892_47	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1495892_47	PHROG	phrog_14642	endolysin	lysis
UHGV-1495892_47	UniRef90	UniRef90_A0A8D9PGU7	Cell Wall Hydrolase	NA
UHGV-1495892_47	eggNOG-mapper	742733.HMPREF9469_00034	Cell Wall Hydrolase	NA
UHGV-1495892_47	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-1495892_47	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-1495892_47	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-1495892_48	UniRef90	UniRef90_A0A8D9UIQ5	Sporulation initiation factor	NA
UHGV-1495892_48	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-1495892_48	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-1495892_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1495892_49	PHROG	phrog_26861	NA	unknown function
UHGV-1495892_49	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-1495892_49	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-1495892_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1495892_49	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-1495892_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1495892_49	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1495892_51	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1495892_51	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1495892_51	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-1495892_51	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-1495892_51	Pfam	PF13476	AAA domain	AAA_23
UHGV-1495892_51	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1495892_51	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1495892_53	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1495892_53	UniRef90	UniRef90_UPI001F3F277E	recombinase RecT	NA
UHGV-1495892_53	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-1495892_53	Pfam	PF03837	RecT family	RecT
UHGV-1495892_53	Structural annotation	NF007351, COG3723	NA	NA
UHGV-1495892_54	PHROG	phrog_25456	NA	unknown function
UHGV-1495892_55	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1495892_55	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-1495892_55	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-1495892_55	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1495892_55	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1495892_55	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-1495892_56	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1495892_56	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-1495892_56	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-1495892_56	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1495892_57	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1495892_57	UniRef90	UniRef90_UPI00045E7F2C	HNH endonuclease	NA
UHGV-1495892_57	eggNOG-mapper	1423814.HMPREF0549_1779	NUMOD4 motif	NA
UHGV-1495892_57	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1495892_57	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1495892_57	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1495892_58	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1495892_58	UniRef90	UniRef90_A0A416JIG7	MBL fold metallo-hydrolase	NA
UHGV-1495892_58	eggNOG-mapper	443254.Marpi_0302	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1495892_58	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1495892_59	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1495892_59	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-1495892_59	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1495892_59	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1495892_59	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-1495892_60	PHROG	phrog_7711	NA	unknown function
UHGV-1495892_60	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-1495892_60	eggNOG-mapper	1226322.HMPREF1545_00031	NA	NA
UHGV-1495892_61	PHROG	phrog_1578	NA	unknown function
UHGV-1495892_61	eggNOG-mapper	637730.C8XUQ6_9CAUD	NA	NA
UHGV-1495892_63	PHROG	phrog_8684	NA	unknown function
UHGV-1495892_63	UniRef90	UniRef90_A0A3R7C0X3	YopX domain-containing protein	NA
UHGV-1495892_63	eggNOG-mapper	1235794.C811_01545	NA	NA
UHGV-1495892_63	Pfam	PF09643	YopX protein	YopX
UHGV-1495892_63	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1495892_64	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-1495892_64	eggNOG-mapper	500632.CLONEX_01572	NA	NA
UHGV-1495892_64	Pfam	PF07866	NA	DUF1653
UHGV-1495892_64	COG	COG4728	NA	NA
UHGV-1495892_64	Structural annotation	PF07866, COG4728	NA	NA
UHGV-1495892_66	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1495892_66	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1495892_66	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-1495892_66	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-1495892_66	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1495892_66	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1495892_66	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1495892_66	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1495892_66	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1495892_68	PHROG	phrog_20593	NA	unknown function
UHGV-1495892_69	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1495892_69	UniRef90	UniRef90_A0A0R1VMU2	Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-1495892_69	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-1495892_70	PHROG	phrog_19106	NA	unknown function
UHGV-1495892_70	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-1495892_70	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-1495892_70	Structural annotation	TIGR01453	NA	NA
UHGV-1495892_73	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-1495892_74	KOfam	K13581	ccrM; modification methylase [EC:2.1.1.72]	NA
UHGV-1495892_74	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1495892_74	UniRef90	UniRef90_X1Q9C4	N6_N4_Mtase domain-containing protein (Fragment)	NA
UHGV-1495892_74	eggNOG-mapper	694427.Palpr_0287	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1495892_74	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1495892_74	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1495892_74	COG	COG0863	DNA modification methylase	NA
UHGV-1495892_75	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1495892_75	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-1495892_75	AcrCatalog	cluster_47493	NA	NA
UHGV-1495892_75	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-1495892_77	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-1495892_77	UniRef90	UniRef90_A0A353JBC1	DnaB_2 domain-containing protein (Fragment)	NA
UHGV-1495892_77	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-1495892_77	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1495892_77	Structural annotation	PF09681, MF_01819, TIGR01714, COG1846	NA	NA