UHGV-1496141

Genome information

Genome length 25,519 bps

CDS count 53

Completeness 60.32% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-1496141
vOTU ID	vOTU-035972
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0185500
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.82
Jumbo phage	No

Genome content
Genome length	25,519 bps
GC content	51.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.19%
Average CDS length	450.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1496141_1	eggNOG-mapper	1384065.JAGS01000001_gene2489	NA	NA
UHGV-1496141_2	PHROG	phrog_3754	NA	unknown function
UHGV-1496141_2	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1496141_3	PHROG	phrog_21718	NA	unknown function
UHGV-1496141_3	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1496141_4	PHROG	phrog_22984	NA	unknown function
UHGV-1496141_5	PHROG	phrog_16490	NA	unknown function
UHGV-1496141_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1496141_6	PHROG	phrog_20016	NA	unknown function
UHGV-1496141_6	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1496141_6	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1496141_7	Structural annotation	PF12510	NA	NA
UHGV-1496141_8	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1496141_9	KOfam	K14059	int; integrase	NA
UHGV-1496141_9	PHROG	phrog_1	integrase	integration and excision
UHGV-1496141_9	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-1496141_9	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-1496141_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1496141_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1496141_9	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1496141_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1496141_10	Structural annotation	PF12844	NA	NA
UHGV-1496141_12	UniRef90	UniRef90_A0A7V6HKR7	Adhesin_P1_N domain-containing protein	NA
UHGV-1496141_12	eggNOG-mapper	1298920.KI911353_gene413	NA	NA
UHGV-1496141_12	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-1496141_12	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1496141_16	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1496141_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1496141_16	UniRef90	UniRef90_A0A810Q1T1	HTH cro/C1-type domain-containing protein	NA
UHGV-1496141_16	eggNOG-mapper	552396.HMPREF0863_02446	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1496141_16	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1496141_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1496141_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1496141_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1496141_18	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-1496141_18	eggNOG-mapper	367336.OM2255_13689	Helix-turn-helix XRE-family like proteins	NA
UHGV-1496141_18	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1496141_18	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1496141_20	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-1496141_20	Structural annotation	PF09035, NF040990	NA	NA
UHGV-1496141_23	PHROG	phrog_4973	NA	unknown function
UHGV-1496141_23	UniRef90	UniRef90_A0A1W1YSW9	Helix-turn-helix domain-containing protein	NA
UHGV-1496141_23	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1496141_23	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1496141_26	PHROG	phrog_14970	NA	unknown function
UHGV-1496141_26	eggNOG-mapper	642492.Clole_0944	double-strand break repair protein	NA
UHGV-1496141_26	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1496141_26	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1496141_26	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1496141_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1496141_27	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1496141_27	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1496141_27	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1496141_28	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1496141_28	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-1496141_28	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-1496141_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1496141_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1496141_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1496141_30	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-1496141_30	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-1496141_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1496141_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1496141_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1496141_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1496141_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1496141_31	PHROG	phrog_15768	NA	unknown function
UHGV-1496141_31	UniRef90	UniRef90_A0A7C1PUJ6	NA	NA
UHGV-1496141_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1496141_31	Structural annotation	PF07120, COG3756	NA	NA
UHGV-1496141_34	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1496141_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1496141_34	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1496141_34	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1496141_34	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1496141_34	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1496141_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1496141_34	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1496141_36	PHROG	phrog_3136	NA	unknown function
UHGV-1496141_36	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1496141_36	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1496141_36	Pfam	PF04266	ASCH domain	ASCH
UHGV-1496141_36	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1496141_36	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1496141_37	PHROG	phrog_38832	NA	unknown function
UHGV-1496141_37	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-1496141_37	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-1496141_41	UniRef90	UniRef90_A0A1C6DFA0	FAD-dependent thymidylate synthase	NA
UHGV-1496141_41	eggNOG-mapper	935948.KE386495_gene2250	NA	NA
UHGV-1496141_41	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1496141_41	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1496141_42	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1496141_42	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-1496141_42	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1496141_43	Structural annotation	PF04606, NF007241	NA	NA
UHGV-1496141_44	PHROG	phrog_24386	NA	unknown function
UHGV-1496141_44	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-1496141_44	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-1496141_45	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1496141_45	UniRef90	UniRef90_A0A316M891	NA	NA
UHGV-1496141_45	eggNOG-mapper	551790.B5BTW0_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-1496141_45	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1496141_45	Structural annotation	PF18909	NA	NA
UHGV-1496141_46	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-1496141_46	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-1496141_47	UniRef90	UniRef90_UPI00164C5C54	helix-turn-helix domain containing protein	NA
UHGV-1496141_47	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1496141_47	Structural annotation	PF13542	NA	NA
UHGV-1496141_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1496141_48	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1496141_48	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1496141_48	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-1496141_48	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1496141_48	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1496141_48	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1496141_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-1496141_48	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1496141_49	PHROG	phrog_533	portal protein	head and packaging
UHGV-1496141_49	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-1496141_49	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1496141_49	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1496141_49	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1496141_50	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1496141_50	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-1496141_50	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1496141_50	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1496141_50	COG	COG2369	NA	NA
UHGV-1496141_50	Structural annotation	PF06152	NA	NA
UHGV-1496141_51	PHROG	phrog_29211	NA	unknown function
UHGV-1496141_53	UniRef90	UniRef90_UPI001C1258D3	phage scaffolding protein	NA
UHGV-1496141_53	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-1496141_53	Structural annotation	PF06810	NA	NA