UHGV-1496303

Genome information

vOTU vOTU-071925

Genome length 42,660 bps

CDS count 47

Completeness 96.92% (high-quality)

geNomad score 0.9615

Prediction confidence Confident

Genome information
Genome ID	UHGV-1496303
vOTU ID	vOTU-071925
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0282095
BioSample	SAMEA1906421
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9615
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.27
Jumbo phage	No

Genome content
Genome length	42,660 bps
GC content	42.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.77%
Average CDS length	834.38 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1496303_4	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1496303_4	PHROG	phrog_1	integrase	integration and excision
UHGV-1496303_4	UniRef90	UniRef90_A0A0F5ILF0	Tyr recombinase domain-containing protein	NA
UHGV-1496303_4	eggNOG-mapper	1122971.BAME01000175_gene6695	Phage integrase SAM-like domain	NA
UHGV-1496303_4	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1496303_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1496303_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1496303_4	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1496303_7	UniRef90	UniRef90_A0A416VQL1	XRE family transcriptional regulator	NA
UHGV-1496303_7	eggNOG-mapper	563008.HMPREF0665_02356	NA	NA
UHGV-1496303_7	Structural annotation	PF13560, NF041677	NA	NA
UHGV-1496303_8	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1496303_8	PHROG	phrog_6444	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1496303_8	UniRef90	UniRef90_A0A0F5IHR4	DNA primase	NA
UHGV-1496303_8	eggNOG-mapper	709991.Odosp_2601	zinc finger	NA
UHGV-1496303_8	PADLOC	drt-UG29	DRT	DRT
UHGV-1496303_8	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1496303_8	Pfam	PF08275	DNA primase catalytic core, N-terminal domain	DNAG_N
UHGV-1496303_8	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1496303_8	NCBIFam	TIGR01391.1	DNA primase	NA
UHGV-1496303_8	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1496303_8	HAMAP	MF_00974	DNA primase [dnaG]	NA
UHGV-1496303_8	Structural annotation	PF01807, PF08275, PF06048, PF13155, PF21650, MF_00974, MF_01625, TIGR01391, TIGR02031, COG0358, COG5519	NA	NA
UHGV-1496303_9	eggNOG-mapper	1235803.C825_03399	NA	NA
UHGV-1496303_10	Structural annotation	PF12945, COG5437	NA	NA
UHGV-1496303_11	KOfam	K04773	sppA; protease IV [EC:3.4.21.-]	NA
UHGV-1496303_11	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-1496303_11	UniRef90	UniRef90_A0A0F5IJ02	Peptidase_S49 domain-containing protein	NA
UHGV-1496303_11	eggNOG-mapper	866771.HMPREF9296_2532	Peptidase, S49 (Protease IV) family protein	NA
UHGV-1496303_11	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-1496303_11	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-1496303_11	Structural annotation	PF01343, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-1496303_12	eggNOG-mapper	1392486.JIAF01000004_gene2009	NA	NA
UHGV-1496303_12	Structural annotation	PF05065, MF_04119, TIGR01551, COG4653	NA	NA
UHGV-1496303_13	PHROG	phrog_19897	NA	unknown function
UHGV-1496303_13	eggNOG-mapper	866771.HMPREF9296_2530	NA	NA
UHGV-1496303_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1496303_17	eggNOG-mapper	563008.HMPREF0665_02344	NA	NA
UHGV-1496303_17	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1496303_18	PHROG	phrog_22277	NA	unknown function
UHGV-1496303_18	eggNOG-mapper	563008.HMPREF0665_02342	NA	NA
UHGV-1496303_18	Structural annotation	PF07230, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-1496303_19	Structural annotation	PF20459	NA	NA
UHGV-1496303_21	Structural annotation	PF09646	NA	NA
UHGV-1496303_23	PHROG	phrog_873	endolysin	head and packaging
UHGV-1496303_23	UniRef90	UniRef90_A0A5C6K5E2	Structural protein P5	NA
UHGV-1496303_23	eggNOG-mapper	762984.HMPREF9445_02517	NA	NA
UHGV-1496303_24	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-1496303_25	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1496303_25	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1496303_25	UniRef90	UniRef90_A7AF72	YcfA-like protein	NA
UHGV-1496303_25	eggNOG-mapper	411477.PARMER_02062	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1496303_25	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1496303_25	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1496303_26	UniRef90	UniRef90_A0A3R6VHH0	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1496303_26	eggNOG-mapper	1121129.KB903370_gene109	PFAM Uncharacterised protein family UPF0150	NA
UHGV-1496303_26	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1496303_26	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-1496303_31	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-1496303_31	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1496303_31	UniRef90	UniRef90_A0A0F5IHW6	HSDR_N_2 domain-containing protein	NA
UHGV-1496303_31	eggNOG-mapper	242619.PG_1591	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-1496303_31	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-1496303_31	COG	COG4748	NA	NA
UHGV-1496303_31	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-1496303_32	PHROG	phrog_2700	NA	unknown function
UHGV-1496303_32	UniRef90	UniRef90_A0A0F5IJ19	SHOCT domain-containing protein	NA
UHGV-1496303_32	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1496303_36	eggNOG-mapper	563008.HMPREF0665_02322	NA	NA
UHGV-1496303_37	PHROG	phrog_26804	NA	unknown function
UHGV-1496303_37	UniRef90	UniRef90_A0A316R717	Phage tail tape measure protein	NA
UHGV-1496303_37	eggNOG-mapper	1235803.C825_03430	Phage-related minor tail protein	NA
UHGV-1496303_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1496303_37	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1496303_38	eggNOG-mapper	1235803.C825_03431	NA	NA
UHGV-1496303_38	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1496303_39	PHROG	phrog_22546	NA	unknown function
UHGV-1496303_39	eggNOG-mapper	1235803.C825_03432	Phage minor structural protein	NA
UHGV-1496303_39	COG	COG4926	Phage-related protein	NA
UHGV-1496303_39	Structural annotation	PF04862, PF16774, PF07356, PF20073	NA	NA
UHGV-1496303_42	PHROG	phrog_36886	NA	unknown function
UHGV-1496303_42	UniRef90	UniRef90_A0A8D9PFB9	Collagen triple helix repeat protein	NA
UHGV-1496303_42	eggNOG-mapper	1235803.C825_03435	translation initiation factor activity	NA
UHGV-1496303_42	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1496303_43	eggNOG-mapper	411479.BACUNI_00733	NA	NA
UHGV-1496303_43	Structural annotation	PF14301	NA	NA
UHGV-1496303_44	PHROG	phrog_3545	NA	unknown function
UHGV-1496303_44	UniRef90	UniRef90_UPI00164BACA0	LamG domain-containing protein	NA
UHGV-1496303_44	eggNOG-mapper	938709.AUSH02000001_gene1577	Protein conserved in bacteria	NA
UHGV-1496303_44	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-1496303_44	COG	COG1361	S-layer protein MJ0795, predicted component of type IV pili-like system	NA
UHGV-1496303_47	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1496303_47	PHROG	phrog_1	integrase	integration and excision
UHGV-1496303_47	UniRef90	UniRef90_A0A0F5IJ32	Tyr recombinase domain-containing protein	NA
UHGV-1496303_47	eggNOG-mapper	357276.EL88_22650	Phage integrase family	NA
UHGV-1496303_47	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1496303_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1496303_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1496303_47	Structural annotation	PF00589, PF13102, MF_02055, TIGR02224, COG4973	NA	NA