UHGV-1496531

Genome information

Genome length 43,674 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-1496531
vOTU ID	vOTU-061381
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0287316
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.12
Jumbo phage	No

Genome content
Genome length	43,674 bps
GC content	47.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	83.70%
Average CDS length	779.87 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1496531_1	UniRef90	UniRef90_A0A077ZKY0	Cell wall-associated hydrolase	NA
UHGV-1496531_1	eggNOG-mapper	262768.PAM_250	COG NOG15344 non supervised orthologous group	NA
UHGV-1496531_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1496531_2	PHROG	phrog_2338	endolysin	lysis
UHGV-1496531_2	UniRef90	UniRef90_A0A1Y4GDW0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1496531_2	eggNOG-mapper	1120979.ATVB01000037_gene1492	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1496531_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1496531_2	Pfam	PF06347	Bacterial SH3 domain	SH3_4
UHGV-1496531_2	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1496531_2	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1496531_2	Structural annotation	PF01510, MF_04111, NF008758, NF040675, COG5632	NA	NA
UHGV-1496531_3	eggNOG-mapper	1280681.AUJZ01000045_gene2512	NA	NA
UHGV-1496531_5	KOfam	K14059	int; integrase	NA
UHGV-1496531_5	PHROG	phrog_1	integrase	integration and excision
UHGV-1496531_5	UniRef90	UniRef90_A0A2K2U8R0	Site-specific integrase	NA
UHGV-1496531_5	eggNOG-mapper	1235794.C811_01388	Belongs to the 'phage' integrase family	NA
UHGV-1496531_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1496531_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1496531_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1496531_5	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1496531_6	PHROG	phrog_13141	NA	unknown function
UHGV-1496531_6	UniRef90	UniRef90_A0A087E4D0	Phage-related putative tail protein	NA
UHGV-1496531_6	eggNOG-mapper	78345.BMERY_0866	NA	NA
UHGV-1496531_6	Structural annotation	PF20747	NA	NA
UHGV-1496531_8	PHROG	phrog_538	minor tail protein	tail
UHGV-1496531_8	UniRef90	UniRef90_A0A087E4D2	Phage head fiber protein	NA
UHGV-1496531_8	eggNOG-mapper	1111121.HMPREF1247_0853	NA	NA
UHGV-1496531_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1496531_8	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1496531_9	UniRef90	UniRef90_UPI001EDCD142	phage tail family protein	NA
UHGV-1496531_9	eggNOG-mapper	1111121.HMPREF1247_0852	NA	NA
UHGV-1496531_9	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1496531_10	PHROG	phrog_12798	NA	unknown function
UHGV-1496531_10	UniRef90	UniRef90_A0A1Y3U9A5	TMP_3 domain-containing protein	NA
UHGV-1496531_10	eggNOG-mapper	1273103.NM10_06751	tape measure	NA
UHGV-1496531_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1496531_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1496531_10	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1496531_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1496531_11	PHROG	phrog_706	NA	unknown function
UHGV-1496531_11	UniRef90	UniRef90_UPI0009B9DB3F	Gp15 family bacteriophage protein	NA
UHGV-1496531_11	eggNOG-mapper	1300150.EMQU_2490	Bacteriophage Gp15 protein	NA
UHGV-1496531_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1496531_11	Structural annotation	PF06854	NA	NA
UHGV-1496531_12	Structural annotation	PF10666	NA	NA
UHGV-1496531_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1496531_14	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1496531_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1496531_15	UniRef90	UniRef90_UPI0015CA7E8D	minor capsid protein	NA
UHGV-1496531_15	eggNOG-mapper	1234679.BN424_2619	Minor capsid protein	NA
UHGV-1496531_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1496531_15	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1496531_16	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1496531_18	PHROG	phrog_544	major head protein	head and packaging
UHGV-1496531_18	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-1496531_18	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-1496531_18	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1496531_18	Structural annotation	PF06673, PF13629, MF_04119, TIGR04387, NF005261, COG4653	NA	NA
UHGV-1496531_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1496531_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1496531_19	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1496531_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1496531_23	UniRef90	UniRef90_UPI0003ADCFD0	phage capsid protein	NA
UHGV-1496531_23	eggNOG-mapper	1111121.HMPREF1247_0842	Phage minor capsid protein 2	NA
UHGV-1496531_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1496531_23	COG	COG2369	NA	NA
UHGV-1496531_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-1496531_24	UniRef90	UniRef90_UPI00189938B4	phage portal protein	NA
UHGV-1496531_24	eggNOG-mapper	1232436.CAPF01000009_gene1765	phage minor capsid protein	NA
UHGV-1496531_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1496531_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1496531_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1496531_25	UniRef90	UniRef90_A0A369MN51	Terminase_3 domain-containing protein	NA
UHGV-1496531_25	eggNOG-mapper	1000569.HMPREF1040_0200	Phage terminase, large subunit	NA
UHGV-1496531_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1496531_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1496531_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1496531_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-1496531_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1496531_26	PHROG	phrog_5783	NA	unknown function
UHGV-1496531_26	UniRef90	UniRef90_G1WJ02	NYN domain-containing protein	NA
UHGV-1496531_26	eggNOG-mapper	742742.HMPREF9452_01315	NYN domain	NA
UHGV-1496531_26	Pfam	PF01936	NYN domain	NYN
UHGV-1496531_26	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-1496531_26	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-1496531_29	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1496531_29	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1496531_29	UniRef90	UniRef90_UPI000DF7684C	AAA family ATPase	NA
UHGV-1496531_29	eggNOG-mapper	1121866.AUGK01000014_gene2063	Primase C terminal 2 (PriCT-2)	NA
UHGV-1496531_29	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1496531_29	Pfam	PF13481	AAA domain	AAA_25
UHGV-1496531_29	COG	COG3598	RecA-family ATPase	NA
UHGV-1496531_29	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1496531_30	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1496531_30	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1496531_30	UniRef90	UniRef90_A0A143WWF7	Type I restriction enzyme EcoKI subunit R	NA
UHGV-1496531_30	eggNOG-mapper	1121866.AUGK01000014_gene2068	helicase	NA
UHGV-1496531_30	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1496531_30	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1496531_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1496531_30	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1496531_30	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1496531_31	PHROG	phrog_2698	NA	unknown function
UHGV-1496531_31	UniRef90	UniRef90_A0A369MRQ8	NA	NA
UHGV-1496531_31	eggNOG-mapper	1121866.AUGK01000014_gene2069	NA	NA
UHGV-1496531_32	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1496531_32	UniRef90	UniRef90_UPI001896F7FA	AAA family ATPase	NA
UHGV-1496531_32	eggNOG-mapper	1232449.BAHV02000010_gene2697	AAA domain	NA
UHGV-1496531_32	Pfam	PF13479	AAA domain	AAA_24
UHGV-1496531_32	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1496531_34	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1496531_34	PHROG	phrog_1499	NA	unknown function
UHGV-1496531_34	UniRef90	UniRef90_A0A369MN61	Chromosome segregation protein SMC	NA
UHGV-1496531_34	eggNOG-mapper	1273103.NM10_06866	AAA domain	NA
UHGV-1496531_34	Pfam	PF13476	AAA domain	AAA_23
UHGV-1496531_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1496531_34	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-1496531_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1496531_35	PHROG	phrog_18056	ParB-like partition nuclease	DNA, RNA and nucleotide metabolism
UHGV-1496531_35	UniRef90	UniRef90_R7CC80	ParB-like protein	NA
UHGV-1496531_35	eggNOG-mapper	1121866.AUGK01000014_gene2072	chromosome segregation	NA
UHGV-1496531_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1496531_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1496531_35	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1496531_36	eggNOG-mapper	1235794.C811_01351	NA	NA
UHGV-1496531_37	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1496531_37	UniRef90	UniRef90_A0A345MKF7	Holliday junction resolvase	NA
UHGV-1496531_37	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1496531_39	PHROG	phrog_10045	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1496531_39	UniRef90	UniRef90_A0A7X5EBN9	DNA-binding protein	NA
UHGV-1496531_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1496531_39	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1496531_39	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1496531_42	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1496531_42	UniRef90	UniRef90_R9L595	HTH cro/C1-type domain-containing protein	NA
UHGV-1496531_42	eggNOG-mapper	1235794.C811_01344	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1496531_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1496531_42	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1496531_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1496531_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1496531_43	UniRef90	UniRef90_R9KWK1	HTH cro/C1-type domain-containing protein	NA
UHGV-1496531_43	eggNOG-mapper	1235794.C811_01341	Helix-turn-helix	NA
UHGV-1496531_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1496531_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1496531_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1496531_46	UniRef90	UniRef90_UPI00195E5A35	NA	NA
UHGV-1496531_46	eggNOG-mapper	1355368.JART01000019_gene903	NA	NA
UHGV-1496531_46	PADLOC	retron_type_VII_duf3800_cluster2165_1	NA	Retron
UHGV-1496531_46	Pfam	PF12686	NA	DUF3800
UHGV-1496531_47	KOfam	K14059	int; integrase	NA
UHGV-1496531_47	PHROG	phrog_1	integrase	integration and excision
UHGV-1496531_47	UniRef90	UniRef90_R7CCU3	Site-specific recombinase XerC	NA
UHGV-1496531_47	eggNOG-mapper	1384484.AEQU_0984	Belongs to the 'phage' integrase family	NA
UHGV-1496531_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1496531_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1496531_47	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA