UHGV-1496784

Genome information

Genome length 25,535 bps

CDS count 28

Completeness 63.29% (medium-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-1496784
vOTU ID	vOTU-035568
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0185599
BioSample	SAMEA1906490
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.72
Jumbo phage	No

Genome content
Genome length	25,535 bps
GC content	41.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	95.50%
Average CDS length	874.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1496784_2	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-1496784_2	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-1496784_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1496784_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1496784_3	UniRef90	UniRef90_A0A2S5GAL3	PBSX family phage terminase large subunit	NA
UHGV-1496784_3	eggNOG-mapper	1307436.PBF_04330	Terminase-like family	NA
UHGV-1496784_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1496784_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1496784_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-1496784_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1496784_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-1496784_4	UniRef90	UniRef90_A0A7X5KS83	Phage portal protein	NA
UHGV-1496784_4	eggNOG-mapper	1235800.C819_00489	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1496784_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1496784_4	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1496784_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1496784_5	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1496784_5	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-1496784_5	eggNOG-mapper	1294142.CINTURNW_1685	Phage Mu protein F like protein	NA
UHGV-1496784_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1496784_5	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1496784_5	COG	COG2369	NA	NA
UHGV-1496784_5	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1496784_7	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1496784_7	UniRef90	UniRef90_A0A7X8WJP6	NA	NA
UHGV-1496784_7	eggNOG-mapper	1111134.HMPREF1253_1185	NA	NA
UHGV-1496784_7	Pfam	PF14265	NA	DUF4355
UHGV-1496784_7	Structural annotation	PF14265	NA	NA
UHGV-1496784_8	PHROG	phrog_247	major head protein	head and packaging
UHGV-1496784_8	UniRef90	UniRef90_A0A1E4RB02	Phage coat protein	NA
UHGV-1496784_8	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-1496784_8	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-1496784_8	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1496784_9	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1496784_9	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-1496784_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1496784_9	Structural annotation	PF05135	NA	NA
UHGV-1496784_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1496784_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1496784_11	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-1496784_11	eggNOG-mapper	1443125.Z962_05620	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1496784_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1496784_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1496784_11	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1496784_12	PHROG	phrog_78	tail terminator	connector
UHGV-1496784_12	eggNOG-mapper	1124578.H0USX0_9CAUD	NA	NA
UHGV-1496784_12	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1496784_13	PHROG	phrog_88	major tail protein	tail
UHGV-1496784_13	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-1496784_13	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-1496784_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1496784_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1496784_15	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1496784_15	PHROG	phrog_17321	NA	unknown function
UHGV-1496784_15	UniRef90	UniRef90_A0A416CW06	Phage tail tape measure protein	NA
UHGV-1496784_15	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-1496784_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1496784_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1496784_15	COG	COG1340	NA	NA
UHGV-1496784_15	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1496784_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1496784_16	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-1496784_16	eggNOG-mapper	365048.Q0H226_9CAUD	Phage tail protein	NA
UHGV-1496784_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1496784_16	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-1496784_17	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1496784_17	UniRef90	UniRef90_A0A7X5KS71	Prophage_tail domain-containing protein	NA
UHGV-1496784_17	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-1496784_17	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1496784_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1496784_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1496784_17	COG	COG4926	Phage-related protein	NA
UHGV-1496784_17	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1496784_18	eggNOG-mapper	755731.Clo1100_2171	NA	NA
UHGV-1496784_19	PHROG	phrog_10777	NA	unknown function
UHGV-1496784_19	eggNOG-mapper	376686.Fjoh_2120	NA	NA
UHGV-1496784_19	Pfam	PF02037	SAP domain	SAP
UHGV-1496784_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1496784_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1496784_20	UniRef90	UniRef90_A0A1V5XCG7	HTH-type transcriptional regulator ImmR	NA
UHGV-1496784_20	eggNOG-mapper	246199.CUS_5582	sequence-specific DNA binding	NA
UHGV-1496784_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1496784_20	COG	COG1426	NA	NA
UHGV-1496784_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1496784_21	UniRef90	UniRef90_UPI0001E081F8	helix-turn-helix domain-containing protein	NA
UHGV-1496784_21	eggNOG-mapper	1211844.CBLM010000016_gene1521	Helix-turn-helix XRE-family like proteins	NA
UHGV-1496784_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1496784_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1496784_22	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1496784_22	UniRef90	UniRef90_A0A413G2D9	Bro-N domain-containing protein	NA
UHGV-1496784_22	eggNOG-mapper	748727.CLJU_c03400	Phage antirepressor protein	NA
UHGV-1496784_22	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1496784_22	COG	COG3617	Prophage antirepressor	NA
UHGV-1496784_22	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-1496784_23	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-1496784_23	UniRef90	UniRef90_A0A7V6YVA8	Bro-N domain-containing protein	NA
UHGV-1496784_23	eggNOG-mapper	1118054.CAGW01000094_gene4684	BRO family, N-terminal domain	NA
UHGV-1496784_23	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1496784_23	COG	COG3617	Prophage antirepressor	NA
UHGV-1496784_23	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-1496784_26	PHROG	phrog_4775	pre-neck appendage protein	connector
UHGV-1496784_26	eggNOG-mapper	97138.C820_00748	Peptidase_G2, IMC autoproteolytic cleavage domain	NA
UHGV-1496784_26	Pfam	PF11962	Peptidase_G2, IMC autoproteolytic cleavage domain	Peptidase_G2
UHGV-1496784_26	COG	COG5295	Autotransporter adhesin	NA
UHGV-1496784_27	PHROG	phrog_199	holin	lysis
UHGV-1496784_27	UniRef90	UniRef90_A0A1H3HCF5	Toxin secretion/phage lysis holin	NA
UHGV-1496784_27	eggNOG-mapper	411467.BACCAP_00280	Bacteriophage holin family	NA
UHGV-1496784_27	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1496784_27	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1496784_27	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1496784_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1496784_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1496784_28	PHROG	phrog_9611	endolysin	lysis
UHGV-1496784_28	UniRef90	UniRef90_A0A3D4VSM4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1496784_28	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-1496784_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1496784_28	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1496784_28	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA