UHGV-1497377

Genome information

vOTU vOTU-019153

Genome length 48,757 bps

CDS count 77

Completeness 77.83% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-1497377
vOTU ID	vOTU-019153
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0306646
BioSample	SAMN02334069
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.24
Jumbo phage	No

Genome content
Genome length	48,757 bps
GC content	54.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	91.95%
Average CDS length	585.90 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1497377_1	KOfam	K20361	USO1; intracellular protein transport protein USO1	NA
UHGV-1497377_1	PHROG	phrog_26466	NA	unknown function
UHGV-1497377_1	eggNOG-mapper	78346.BRUM_0385	cellulase activity	NA
UHGV-1497377_1	COG	COG4372	NA	NA
UHGV-1497377_2	PHROG	phrog_1885	minor tail protein	tail
UHGV-1497377_2	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-1497377_2	eggNOG-mapper	35760.BCHO_0828	NA	NA
UHGV-1497377_2	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1497377_3	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-1497377_3	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-1497377_3	eggNOG-mapper	1692.BMAGN_1457	NA	NA
UHGV-1497377_3	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-1497377_4	PHROG	phrog_5577	minor tail protein	tail
UHGV-1497377_4	UniRef90	UniRef90_A0A087B697	Putative phage protein gp15	NA
UHGV-1497377_4	eggNOG-mapper	35760.BCHO_0830	NA	NA
UHGV-1497377_4	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1497377_5	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1497377_5	UniRef90	UniRef90_A0A1X2Z8L9	Structural protein	NA
UHGV-1497377_5	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-1497377_5	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-1497377_7	PHROG	phrog_36579	NA	unknown function
UHGV-1497377_8	PHROG	phrog_117	major tail protein	tail
UHGV-1497377_8	UniRef90	UniRef90_A0A1D7UNT0	Phage coat protein	NA
UHGV-1497377_8	eggNOG-mapper	1692.BMAGN_1451	NA	NA
UHGV-1497377_8	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1497377_9	Structural annotation	PF12691	NA	NA
UHGV-1497377_10	PHROG	phrog_32608	NA	unknown function
UHGV-1497377_10	Structural annotation	PF17395	NA	NA
UHGV-1497377_11	PHROG	phrog_25853	NA	unknown function
UHGV-1497377_11	UniRef90	UniRef90_A0A1X2Z7Z3	Thiamine biosynthesis protein ThiS	NA
UHGV-1497377_11	eggNOG-mapper	1692.BMAGN_1448	NA	NA
UHGV-1497377_11	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1497377_12	PHROG	phrog_36776	NA	unknown function
UHGV-1497377_12	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-1497377_13	PHROG	phrog_29	major head protein	head and packaging
UHGV-1497377_13	UniRef90	UniRef90_A0A1X2Z7Z8	Phage major head	NA
UHGV-1497377_13	eggNOG-mapper	35760.BCHO_0839	Phage major capsid protein E	NA
UHGV-1497377_13	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1497377_13	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-1497377_14	PHROG	phrog_3583	head decoration	head and packaging
UHGV-1497377_14	UniRef90	UniRef90_A0A1X2Z811	Bacteriophage lambda head decoration like-protein	NA
UHGV-1497377_14	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-1497377_14	Structural annotation	PF02924	NA	NA
UHGV-1497377_15	UniRef90	UniRef90_A0A087B686	Putative phage protein gp5	NA
UHGV-1497377_15	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-1497377_16	PHROG	phrog_36668	NA	unknown function
UHGV-1497377_16	UniRef90	UniRef90_A0A1X2Z7Y6	NA	NA
UHGV-1497377_16	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-1497377_16	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1497377_17	PHROG	phrog_104	portal protein	head and packaging
UHGV-1497377_17	UniRef90	UniRef90_A0A1X2Z7Y5	Portal protein	NA
UHGV-1497377_17	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-1497377_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1497377_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1497377_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1497377_18	UniRef90	UniRef90_A0A1X2Z7Y3	Phage terminase large subunit	NA
UHGV-1497377_18	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-1497377_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1497377_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1497377_19	PHROG	phrog_226	minor tail protein	tail
UHGV-1497377_19	UniRef90	UniRef90_A0A087B682	Putative phage protein gp1	NA
UHGV-1497377_20	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1497377_20	UniRef90	UniRef90_A0A5M9ZVQ2	NA	NA
UHGV-1497377_20	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-1497377_21	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1497377_21	UniRef90	UniRef90_E0Q7D2	HNH endonuclease domain protein	NA
UHGV-1497377_21	eggNOG-mapper	1692.BMAGN_1438	HNH endonuclease	NA
UHGV-1497377_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1497377_23	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1497377_23	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1497377_23	UniRef90	UniRef90_A0A1X2Z7Y1	HTH cro/C1-type domain-containing protein	NA
UHGV-1497377_23	eggNOG-mapper	762211.BSTEL_0947	Helix-turn-helix domain	NA
UHGV-1497377_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1497377_23	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-1497377_34	PHROG	phrog_547	phosphoesterase	other
UHGV-1497377_34	UniRef90	UniRef90_A0A1X3A1P1	Metallophos domain-containing protein	NA
UHGV-1497377_34	eggNOG-mapper	1680.BADO_0635	phosphoesterase or phosphohydrolase	NA
UHGV-1497377_34	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1497377_34	COG	COG4186	NA	NA
UHGV-1497377_34	Structural annotation	PF12850, MF_00575, NF003743, COG4186	NA	NA
UHGV-1497377_38	Structural annotation	PF13069	NA	NA
UHGV-1497377_39	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1497377_39	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1497377_39	UniRef90	UniRef90_A7A5D6	dUTP diphosphatase	NA
UHGV-1497377_39	eggNOG-mapper	1238186.AOCN01000026_gene2061	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1497377_39	Pfam	PF00692	dUTPase	dUTPase
UHGV-1497377_39	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-1497377_39	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1497377_39	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1497377_42	PHROG	phrog_908	NA	unknown function
UHGV-1497377_42	UniRef90	UniRef90_A0A087B513	PhnA protein	NA
UHGV-1497377_42	eggNOG-mapper	1688.BCUN_0617	NA	NA
UHGV-1497377_45	PHROG	phrog_3641	NA	unknown function
UHGV-1497377_47	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-1497377_47	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-1497377_49	Structural annotation	PF08410, NF005233, COG5515	NA	NA
UHGV-1497377_50	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1497377_50	UniRef90	UniRef90_A0A2R4G2L6	Class I SAM-dependent methyltransferase	NA
UHGV-1497377_50	eggNOG-mapper	1115632.JAFW01000001_gene426	tRNA (guanine-N2-)-methyltransferase activity	NA
UHGV-1497377_50	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1497377_50	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1497377_50	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-1497377_50	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1497377_52	UniRef90	UniRef90_A0A1X3A9R1	Transposase	NA
UHGV-1497377_52	eggNOG-mapper	1435051.BMOU_0784	NA	NA
UHGV-1497377_54	Structural annotation	TIGR03655	NA	NA
UHGV-1497377_56	UniRef90	UniRef90_A0A0A7I3Q2	Peptidase	NA
UHGV-1497377_59	PHROG	phrog_17662	NA	unknown function
UHGV-1497377_59	UniRef90	UniRef90_A0A1X2ZJJ5	Radical SAM domain-containing protein	NA
UHGV-1497377_59	eggNOG-mapper	642492.Clole_0962	NA	NA
UHGV-1497377_59	Structural annotation	MF_01225_B, TIGR04334, COG0535	NA	NA
UHGV-1497377_62	UniRef90	UniRef90_A0A0A7I2M5	Peptidase U32	NA
UHGV-1497377_63	PHROG	phrog_236	nucleotide kinase	other
UHGV-1497377_63	UniRef90	UniRef90_A0A1X3A1Z3	NA	NA
UHGV-1497377_63	eggNOG-mapper	1680.BADO_1253	NA	NA
UHGV-1497377_63	Pfam	PF11753	NA	DUF3310
UHGV-1497377_64	PHROG	phrog_14515	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1497377_64	UniRef90	UniRef90_A0A229W0S9	Restriction endonuclease	NA
UHGV-1497377_64	eggNOG-mapper	1437605.BACT_0509	HNH endonuclease	NA
UHGV-1497377_64	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1497377_65	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1497377_65	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-1497377_65	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1497377_69	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1497377_69	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1497377_69	UniRef90	UniRef90_A7A2M1	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1497377_69	eggNOG-mapper	1341695.BBOMB_1058	Endodeoxyribonuclease RusA	NA
UHGV-1497377_69	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1497377_69	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1497377_71	KOfam	K24451	zim; modification methylase	NA
UHGV-1497377_71	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1497377_71	UniRef90	UniRef90_A7A2M2	Methyltransferase	NA
UHGV-1497377_71	eggNOG-mapper	1122997.AUDD01000007_gene814	N-4 methylation of cytosine	NA
UHGV-1497377_71	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-1497377_71	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1497377_71	COG	COG0863	DNA modification methylase	NA
UHGV-1497377_71	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1497377_72	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1497377_72	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1497377_72	UniRef90	UniRef90_E0Q7H7	Helicase C-terminal domain protein	NA
UHGV-1497377_72	eggNOG-mapper	1122997.AUDD01000007_gene815	DEAD-like helicases superfamily	NA
UHGV-1497377_72	PADLOC	DpdE_00013	DpdE	DPD
UHGV-1497377_72	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1497377_72	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1497377_72	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1497377_72	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-1497377_73	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1497377_73	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1497377_73	UniRef90	UniRef90_UPI001106E9AB	single-stranded DNA-binding protein	NA
UHGV-1497377_73	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-1497377_73	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1497377_73	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-1497377_73	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1497377_73	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1497377_73	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-1497377_74	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1497377_74	UniRef90	UniRef90_UPI001F0FBE15	ERF family protein	NA
UHGV-1497377_74	eggNOG-mapper	1121445.ATUZ01000002_gene2426	ERF superfamily	NA
UHGV-1497377_74	Pfam	PF04404	ERF superfamily	ERF
UHGV-1497377_74	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1497377_75	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-1497377_75	UniRef90	UniRef90_A7A2M6	NA	NA
UHGV-1497377_75	eggNOG-mapper	1688.BCUN_0592	NA	NA
UHGV-1497377_75	Pfam	PF12684	NA	DUF3799
UHGV-1497377_75	Structural annotation	PF12684, MF_03030, TIGR01896, COG5377	NA	NA
UHGV-1497377_77	eggNOG-mapper	78346.BRUM_0416	NA	NA