UHGV-1497380

Genome information

Genome length 48,760 bps

CDS count 66

Completeness 65.90% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-1497380
vOTU ID	vOTU-025539
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0306655
BioSample	SAMN02333977
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.24
Jumbo phage	No

Genome content
Genome length	48,760 bps
GC content	42.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.71%
Average CDS length	664.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1497380_1	PHROG	phrog_14770	NA	unknown function
UHGV-1497380_1	UniRef90	UniRef90_K1UH82	LPD38 domain-containing protein (Fragment)	NA
UHGV-1497380_1	eggNOG-mapper	1347393.HG726020_gene1834	CRISPR-associated helicase, Cas3	NA
UHGV-1497380_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1497380_1	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1497380_4	eggNOG-mapper	762968.HMPREF9441_00550	NA	NA
UHGV-1497380_5	PHROG	phrog_38431	NA	unknown function
UHGV-1497380_5	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-1497380_5	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-1497380_7	PHROG	phrog_28898	NA	unknown function
UHGV-1497380_7	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-1497380_7	Structural annotation	PF10781	NA	NA
UHGV-1497380_8	PHROG	phrog_31654	NA	unknown function
UHGV-1497380_8	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-1497380_9	PHROG	phrog_16490	NA	unknown function
UHGV-1497380_9	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-1497380_9	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-1497380_14	eggNOG-mapper	1423755.BAML01000004_gene368	lipolytic protein G-D-S-L family	NA
UHGV-1497380_14	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1497380_15	PHROG	phrog_28766	tail fiber protein	tail
UHGV-1497380_15	Structural annotation	COG5456	NA	NA
UHGV-1497380_16	Structural annotation	PF17994	NA	NA
UHGV-1497380_17	Structural annotation	PF17212	NA	NA
UHGV-1497380_19	PHROG	phrog_26635	NA	unknown function
UHGV-1497380_19	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1497380_20	PHROG	phrog_22323	NA	unknown function
UHGV-1497380_20	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-1497380_21	PHROG	phrog_156	portal protein	head and packaging
UHGV-1497380_21	eggNOG-mapper	563031.HMPREF0666_01151	NA	NA
UHGV-1497380_21	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1497380_23	Structural annotation	PF02368	NA	NA
UHGV-1497380_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1497380_26	UniRef90	UniRef90_UPI00192482D4	terminase	NA
UHGV-1497380_26	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-1497380_26	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1497380_26	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1497380_27	PHROG	phrog_32516	NA	unknown function
UHGV-1497380_27	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-1497380_27	Structural annotation	PF11134, COG2706	NA	NA
UHGV-1497380_29	PHROG	phrog_27246	NA	unknown function
UHGV-1497380_32	PHROG	phrog_20732	NA	unknown function
UHGV-1497380_32	UniRef90	UniRef90_UPI000C787A6F	phage holin family protein	NA
UHGV-1497380_32	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-1497380_32	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1497380_33	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1497380_33	PHROG	phrog_822	amidase	lysis
UHGV-1497380_33	UniRef90	UniRef90_K1SWX0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1497380_33	eggNOG-mapper	1127696.HMPREF9134_00800	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1497380_33	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1497380_33	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1497380_33	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1497380_34	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-1497380_35	UniRef90	UniRef90_A0A3E5E9F8	DNA-binding protein	NA
UHGV-1497380_35	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-1497380_36	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1497380_36	UniRef90	UniRef90_A0A3E5E9I6	Class I SAM-dependent methyltransferase	NA
UHGV-1497380_36	eggNOG-mapper	1121098.HMPREF1534_01090	Methyltransferase domain	NA
UHGV-1497380_36	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1497380_36	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-1497380_36	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1497380_41	PHROG	phrog_8684	NA	unknown function
UHGV-1497380_41	UniRef90	UniRef90_A0A3R6HQ56	YopX domain-containing protein	NA
UHGV-1497380_41	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-1497380_41	Pfam	PF09643	YopX protein	YopX
UHGV-1497380_41	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1497380_43	Structural annotation	PF11910, MF_01354, TIGR00405	NA	NA
UHGV-1497380_45	UniRef90	UniRef90_A0A3R6HTB0	NA	NA
UHGV-1497380_45	Pfam	PF04448	NA	DUF551
UHGV-1497380_45	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-1497380_48	PHROG	phrog_24381	NA	unknown function
UHGV-1497380_51	Structural annotation	PF20338	NA	NA
UHGV-1497380_52	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1497380_52	UniRef90	UniRef90_A0A840TPV7	NA	NA
UHGV-1497380_53	eggNOG-mapper	1347393.HG726021_gene517	NA	NA
UHGV-1497380_53	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1497380_54	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1497380_54	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1497380_54	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-1497380_54	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1497380_54	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1497380_54	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-1497380_55	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1497380_55	UniRef90	UniRef90_A0A358XPM0	Endodeoxyribonuclease	NA
UHGV-1497380_55	eggNOG-mapper	1458851.X2KXT0_9CAUD	HNH endonuclease	NA
UHGV-1497380_55	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1497380_55	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1497380_55	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1497380_56	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1497380_56	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1497380_56	UniRef90	UniRef90_A0A646FUA9	Recombinase	NA
UHGV-1497380_56	eggNOG-mapper	445970.ALIPUT_02693	Recombinase, phage RecT family	NA
UHGV-1497380_56	Pfam	PF03837	RecT family	RecT
UHGV-1497380_56	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1497380_56	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1497380_56	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1497380_58	Structural annotation	PF18300, COG5475	NA	NA
UHGV-1497380_59	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1497380_59	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1497380_59	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-1497380_59	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-1497380_59	Pfam	PF13476	AAA domain	AAA_23
UHGV-1497380_59	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1497380_59	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1497380_61	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1497380_61	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1497380_61	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-1497380_61	eggNOG-mapper	1122128.AUEE01000007_gene1660	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1497380_61	Pfam	PF00692	dUTPase	dUTPase
UHGV-1497380_61	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1497380_61	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1497380_62	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1497380_62	UniRef90	UniRef90_A0A414YGC0	Recombinase	NA
UHGV-1497380_62	eggNOG-mapper	435591.BDI_0857	Bacteriophage Lambda NinG protein	NA
UHGV-1497380_62	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1497380_62	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1497380_62	Structural annotation	PF05766	NA	NA
UHGV-1497380_64	Structural annotation	PF08587	NA	NA
UHGV-1497380_65	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1497380_65	UniRef90	UniRef90_A0A3R5ZKQ5	XRE family transcriptional regulator	NA
UHGV-1497380_65	eggNOG-mapper	886379.AEWI01000013_gene2144	Helix-turn-helix XRE-family like proteins	NA
UHGV-1497380_65	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1497380_65	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1497380_66	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1497380_66	PHROG	phrog_1	integrase	integration and excision
UHGV-1497380_66	UniRef90	UniRef90_UPI001C389085	site-specific integrase	NA
UHGV-1497380_66	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-1497380_66	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1497380_66	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1497380_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1497380_66	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1497380_66	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA