UHGV-1498223

Genome information

Genome length 25,780 bps

CDS count 42

Completeness 69.57% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-1498223
vOTU ID	vOTU-028478
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0187094
BioSample	SAMN06328466
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.14
Jumbo phage	No

Genome content
Genome length	25,780 bps
GC content	40.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	85.59%
Average CDS length	528.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1498223_1	PHROG	phrog_8487	NA	unknown function
UHGV-1498223_1	UniRef90	UniRef90_O48383	Orf111	NA
UHGV-1498223_1	eggNOG-mapper	646413.C5IUL2_9CAUD	Streptococcus thermophilus bacteriophage Gp111 protein	NA
UHGV-1498223_1	Pfam	PF07410	Streptococcus thermophilus bacteriophage Gp111 protein	Phage_Gp111
UHGV-1498223_1	Structural annotation	PF07410	NA	NA
UHGV-1498223_2	PHROG	phrog_4964	NA	unknown function
UHGV-1498223_2	UniRef90	UniRef90_A0A1F2H8S5	Elongation factor G	NA
UHGV-1498223_3	KOfam	K14059	int; integrase	NA
UHGV-1498223_3	PHROG	phrog_1	integrase	integration and excision
UHGV-1498223_3	UniRef90	UniRef90_C5IUL7	Integrase	NA
UHGV-1498223_3	eggNOG-mapper	646413.C5IUL7_9CAUD	Phage integrase family	NA
UHGV-1498223_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1498223_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1498223_4	PHROG	phrog_87	metallo-protease	other
UHGV-1498223_4	UniRef90	UniRef90_A0A3S5E1A2	CI-like repressor, metallo-prtoeinase motif protein	NA
UHGV-1498223_4	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-1498223_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1498223_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1498223_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1498223_5	PHROG	phrog_6701	NA	unknown function
UHGV-1498223_5	UniRef90	UniRef90_A0A448A8K1	Orf73	NA
UHGV-1498223_6	PHROG	phrog_10787	NA	unknown function
UHGV-1498223_6	Structural annotation	PF14524, MF_00791, TIGR02186	NA	NA
UHGV-1498223_7	UniRef90	UniRef90_F8HGP7	HTH cro/C1-type domain-containing protein	NA
UHGV-1498223_7	eggNOG-mapper	525379.HMPREF0819_0484	NA	NA
UHGV-1498223_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1498223_7	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-1498223_8	UniRef90	UniRef90_UPI001897FFDE	XRE family transcriptional regulator	NA
UHGV-1498223_8	eggNOG-mapper	1051631.F8HGP8_9CAUD	NA	NA
UHGV-1498223_8	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-1498223_10	PHROG	phrog_14735	NA	unknown function
UHGV-1498223_11	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1498223_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1498223_11	UniRef90	UniRef90_A0A3G8F9A6	HTH cro/C1-type domain-containing protein	NA
UHGV-1498223_11	eggNOG-mapper	585203.SMSK564_1314	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1498223_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1498223_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1498223_12	UniRef90	UniRef90_A0A3G8F9V0	NA	NA
UHGV-1498223_12	Pfam	PF04480	NA	DUF559
UHGV-1498223_12	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-1498223_13	PHROG	phrog_1733	NA	unknown function
UHGV-1498223_13	UniRef90	UniRef90_UPI00189B2560	CT583 family protein	NA
UHGV-1498223_13	eggNOG-mapper	646413.C5IUM1_9CAUD	NA	NA
UHGV-1498223_13	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1498223_14	PHROG	phrog_2902	anti-repressor	transcription regulation
UHGV-1498223_14	UniRef90	UniRef90_A0A0E2Q3S9	ORF6C domain-containing protein	NA
UHGV-1498223_14	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1498223_14	Structural annotation	PF10552	NA	NA
UHGV-1498223_15	PHROG	phrog_904	excisionase	integration and excision
UHGV-1498223_15	UniRef90	UniRef90_A0A0E2Q2P3	Excisionase	NA
UHGV-1498223_15	eggNOG-mapper	1069533.Sinf_0769	NA	NA
UHGV-1498223_15	Structural annotation	PF20063	NA	NA
UHGV-1498223_17	UniRef90	UniRef90_UPI00076A60D5	Ig-like domain-containing protein	NA
UHGV-1498223_17	eggNOG-mapper	764298.STRMA_0236	Glucan-binding protein C	NA
UHGV-1498223_17	Pfam	PF18652	Adhesin P1 N-terminal domain	Adhesin_P1_N
UHGV-1498223_17	Pfam	PF08363	Glucan-binding protein C	GbpC
UHGV-1498223_17	COG	COG3087	Cell division protein FtsN	NA
UHGV-1498223_17	Structural annotation	PF05737, PF17961, NF000535	NA	NA
UHGV-1498223_18	PHROG	phrog_2486	NA	unknown function
UHGV-1498223_18	UniRef90	UniRef90_A0A139QHN0	NA	NA
UHGV-1498223_19	PHROG	phrog_25348	NA	unknown function
UHGV-1498223_19	UniRef90	UniRef90_UPI0015D2A9A2	ERF family protein	NA
UHGV-1498223_19	eggNOG-mapper	1277892.M1IEW6_9CAUD	ERF superfamily	NA
UHGV-1498223_19	Pfam	PF04404	ERF superfamily	ERF
UHGV-1498223_19	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1498223_20	PHROG	phrog_674	NA	unknown function
UHGV-1498223_20	UniRef90	UniRef90_UPI00116D7F12	NA	NA
UHGV-1498223_20	eggNOG-mapper	1239381.K4JU67_9CAUD	NA	NA
UHGV-1498223_20	Pfam	PF07083	NA	DUF1351
UHGV-1498223_20	Structural annotation	PF07083	NA	NA
UHGV-1498223_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1498223_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1498223_21	UniRef90	UniRef90_A0A1V0H7S2	Single-stranded DNA-binding protein	NA
UHGV-1498223_21	eggNOG-mapper	646413.C5IUI2_9CAUD	Single-strand binding protein family	NA
UHGV-1498223_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1498223_21	NCBIFam	NF005580.0	single-stranded DNA-binding protein	NA
UHGV-1498223_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1498223_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1498223_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1498223_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1498223_22	UniRef90	UniRef90_UPI0015D19E48	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1498223_22	eggNOG-mapper	112023.Q9MCM0_9CAUD	magnesium ion binding	NA
UHGV-1498223_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1498223_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1498223_23	PHROG	phrog_1982	NA	unknown function
UHGV-1498223_23	UniRef90	UniRef90_Q9XJU9	Orf89 gp	NA
UHGV-1498223_23	Structural annotation	PF01381, NF040507, COG2944	NA	NA
UHGV-1498223_24	PHROG	phrog_1489	NA	unknown function
UHGV-1498223_24	UniRef90	UniRef90_Q9MCL8	ORF12	NA
UHGV-1498223_24	Structural annotation	PF13773	NA	NA
UHGV-1498223_25	UniRef90	UniRef90_UPI0015D1E53D	sporulation protein Cse60	NA
UHGV-1498223_25	Pfam	PF10957	Sporulation protein Cse60	Spore_Cse60
UHGV-1498223_25	Structural annotation	PF10957, MF_01054	NA	NA
UHGV-1498223_26	PHROG	phrog_121	NA	unknown function
UHGV-1498223_26	UniRef90	UniRef90_UPI001BD982FD	NA	NA
UHGV-1498223_26	eggNOG-mapper	1095737.HMPREF1110_1213	NA	NA
UHGV-1498223_26	Pfam	PF07852	NA	DUF1642
UHGV-1498223_26	Structural annotation	PF07852	NA	NA
UHGV-1498223_27	UniRef90	UniRef90_A0A2H4J853	NA	NA
UHGV-1498223_27	eggNOG-mapper	1444711.CCJF01000005_gene1760	NUDIX domain	NA
UHGV-1498223_27	Pfam	PF07866	NA	DUF1653
UHGV-1498223_27	COG	COG1051	ADP-ribose pyrophosphatase YjhB, NUDIX family	NA
UHGV-1498223_27	Structural annotation	PF20549, NF000331, COG4728	NA	NA
UHGV-1498223_29	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1498223_29	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1498223_29	UniRef90	UniRef90_A0A2H4J705	HTH cro/C1-type domain-containing protein	NA
UHGV-1498223_29	eggNOG-mapper	85154.O34051_BPO12	sequence-specific DNA binding	NA
UHGV-1498223_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1498223_29	Structural annotation	PF01381, PF12643, MF_01019, NF041951, COG1476, COG1694	NA	NA
UHGV-1498223_30	PHROG	phrog_98	NA	unknown function
UHGV-1498223_30	UniRef90	UniRef90_UPI001583CF2A	YopX family protein	NA
UHGV-1498223_30	eggNOG-mapper	1461246.X2KPG8_9VIRU	YopX protein	NA
UHGV-1498223_30	Pfam	PF09643	YopX protein	YopX
UHGV-1498223_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1498223_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1498223_31	PHROG	phrog_1814	NA	unknown function
UHGV-1498223_31	UniRef90	UniRef90_UPI001A933801	NA	NA
UHGV-1498223_31	Pfam	PF07067	NA	DUF1340
UHGV-1498223_31	Structural annotation	PF07067	NA	NA
UHGV-1498223_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1498223_32	UniRef90	UniRef90_F8HGS0	Apaf-1 related killer DARK	NA
UHGV-1498223_32	eggNOG-mapper	1321372.AQQB01000060_gene55	NA	NA
UHGV-1498223_32	Pfam	PF07374	NA	DUF1492
UHGV-1498223_32	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-1498223_33	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1498223_33	UniRef90	UniRef90_Q9XJD9	HNHc domain-containing protein	NA
UHGV-1498223_33	eggNOG-mapper	112023.Q9MCL0_9CAUD	HNH endonuclease	NA
UHGV-1498223_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1498223_33	Structural annotation	PF05766	NA	NA
UHGV-1498223_34	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1498223_34	UniRef90	UniRef90_T0UQV3	Phage terminase, small subunit	NA
UHGV-1498223_34	eggNOG-mapper	64186.Q9XJ77_9CAUD	Phage terminase, small subunit	NA
UHGV-1498223_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1498223_34	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1498223_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1498223_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1498223_35	UniRef90	UniRef90_Q9XJ75	Orf623 gp	NA
UHGV-1498223_35	eggNOG-mapper	633135.C9WB67_9CAUD	Phage Terminase	NA
UHGV-1498223_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1498223_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1498223_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1498223_36	PHROG	phrog_1142	NA	unknown function
UHGV-1498223_36	UniRef90	UniRef90_F8HGS8	Putative head-tail joining protein	NA
UHGV-1498223_36	Pfam	PF06341	NA	DUF1056
UHGV-1498223_36	Structural annotation	PF06341	NA	NA
UHGV-1498223_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-1498223_37	UniRef90	UniRef90_A0A1F1HDM5	Portal protein	NA
UHGV-1498223_37	eggNOG-mapper	112023.Q9MCK6_9CAUD	Phage portal protein	NA
UHGV-1498223_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1498223_37	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1498223_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1498223_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1498223_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1498223_38	UniRef90	UniRef90_F8HGT0	Predicted clp-protease	NA
UHGV-1498223_38	eggNOG-mapper	1051631.F8HGT0_9CAUD	Clp protease	NA
UHGV-1498223_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1498223_38	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1498223_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-1498223_39	UniRef90	UniRef90_C9WB71	Major capsid protein	NA
UHGV-1498223_39	eggNOG-mapper	64186.Q9XJ79_9CAUD	peptidase activity	NA
UHGV-1498223_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1498223_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1498223_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1498223_40	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1498223_40	UniRef90	UniRef90_A0A2G3NPG1	DNA packaging protein	NA
UHGV-1498223_40	eggNOG-mapper	1051631.F8HGT2_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-1498223_40	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1498223_40	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1498223_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1498223_41	PHROG	phrog_25	head closure Hc1	connector
UHGV-1498223_41	UniRef90	UniRef90_UPI00158301B4	phage head closure protein	NA
UHGV-1498223_41	eggNOG-mapper	1051631.F8HGT3_9CAUD	Phage head-tail joining protein	NA
UHGV-1498223_41	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1498223_41	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1498223_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1498223_42	UniRef90	UniRef90_F8HGT4	Putative tail component protein	NA
UHGV-1498223_42	eggNOG-mapper	112023.Q9MCK1_9CAUD	exonuclease activity	NA
UHGV-1498223_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like