UHGV-1498568

Genome information

vOTU vOTU-019020

Genome length 64,840 bps

CDS count 73

Completeness 87.35% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-1498568
vOTU ID	vOTU-019020
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0339110
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.17
Jumbo phage	No

Genome content
Genome length	64,840 bps
GC content	43.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	88.74%
Average CDS length	790.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1498568_1	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1498568_1	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-1498568_1	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-1498568_1	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1498568_1	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1498568_4	Structural annotation	PF02368	NA	NA
UHGV-1498568_6	PHROG	phrog_156	portal protein	head and packaging
UHGV-1498568_6	eggNOG-mapper	563031.HMPREF0666_01151	NA	NA
UHGV-1498568_6	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1498568_7	PHROG	phrog_22323	NA	unknown function
UHGV-1498568_7	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-1498568_8	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1498568_10	PHROG	phrog_22135	NA	unknown function
UHGV-1498568_10	Structural annotation	PF17212	NA	NA
UHGV-1498568_11	Structural annotation	PF17994	NA	NA
UHGV-1498568_12	UniRef90	UniRef90_UPI001C38A0C8	CotH kinase family protein	NA
UHGV-1498568_12	eggNOG-mapper	1233951.IO90_08605	CotH kinase protein	NA
UHGV-1498568_12	Pfam	PF08757	CotH kinase protein	CotH
UHGV-1498568_12	Structural annotation	PF08757, COG5337	NA	NA
UHGV-1498568_16	PHROG	phrog_16490	NA	unknown function
UHGV-1498568_16	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-1498568_16	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-1498568_17	PHROG	phrog_31654	NA	unknown function
UHGV-1498568_17	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-1498568_18	PHROG	phrog_28898	NA	unknown function
UHGV-1498568_18	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-1498568_18	Structural annotation	PF10781	NA	NA
UHGV-1498568_20	PHROG	phrog_38431	NA	unknown function
UHGV-1498568_20	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-1498568_20	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-1498568_22	PHROG	phrog_14770	NA	unknown function
UHGV-1498568_22	UniRef90	UniRef90_A0A415VE78	Helicase ATP-binding domain-containing protein	NA
UHGV-1498568_22	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-1498568_22	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-1498568_22	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-1498568_22	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-1498568_22	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1498568_22	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1498568_25	KOfam	K05811	yfiM; putative lipoprotein	NA
UHGV-1498568_25	Structural annotation	PF10043, NF008028, COG5544	NA	NA
UHGV-1498568_27	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-1498568_28	eggNOG-mapper	1122978.AUFP01000004_gene1839	NA	NA
UHGV-1498568_29	UniRef90	UniRef90_A0A412HHM5	XRE family transcriptional regulator	NA
UHGV-1498568_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1498568_29	Structural annotation	PF01381, COG3655	NA	NA
UHGV-1498568_31	Structural annotation	PF20012	NA	NA
UHGV-1498568_37	Structural annotation	PF18300	NA	NA
UHGV-1498568_41	Structural annotation	PF12286	NA	NA
UHGV-1498568_43	PHROG	phrog_98	NA	unknown function
UHGV-1498568_43	UniRef90	UniRef90_K1SIW5	YopX domain-containing protein	NA
UHGV-1498568_43	Pfam	PF09643	YopX protein	YopX
UHGV-1498568_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1498568_45	Structural annotation	PF10623	NA	NA
UHGV-1498568_48	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1498568_48	UniRef90	UniRef90_A0A3E5E2Y4	HNH endonuclease	NA
UHGV-1498568_48	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-1498568_48	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-1498568_48	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1498568_48	Structural annotation	COG1403	NA	NA
UHGV-1498568_49	Structural annotation	TIGR00739	NA	NA
UHGV-1498568_52	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1498568_52	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1498568_52	UniRef90	UniRef90_A0A353E848	RNase H type-1 domain-containing protein	NA
UHGV-1498568_52	eggNOG-mapper	113355.CM001775_gene2927	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-1498568_52	Pfam	PF00075	RNase H	RNase_H
UHGV-1498568_52	COG	COG0328	Ribonuclease HI	NA
UHGV-1498568_52	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1498568_53	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1498568_53	PHROG	phrog_1	integrase	integration and excision
UHGV-1498568_53	UniRef90	UniRef90_A0A3E5E8Z5	Site-specific integrase	NA
UHGV-1498568_53	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-1498568_53	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1498568_53	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1498568_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1498568_53	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1498568_53	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1498568_54	UniRef90	UniRef90_A0A3R5ZKQ5	XRE family transcriptional regulator	NA
UHGV-1498568_54	eggNOG-mapper	886379.AEWI01000013_gene2144	Helix-turn-helix XRE-family like proteins	NA
UHGV-1498568_54	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1498568_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1498568_56	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1498568_56	UniRef90	UniRef90_A0A1I2SYN3	Bacteriophage Lambda NinG protein	NA
UHGV-1498568_56	eggNOG-mapper	585502.HMPREF0645_2608	NA	NA
UHGV-1498568_56	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1498568_56	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1498568_56	Structural annotation	PF05766	NA	NA
UHGV-1498568_57	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1498568_57	UniRef90	UniRef90_A0A646FRV7	Rha family transcriptional regulator	NA
UHGV-1498568_57	eggNOG-mapper	1347393.HG726022_gene3608	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1498568_57	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1498568_57	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1498568_57	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1498568_57	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-1498568_58	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1498568_58	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1498568_58	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-1498568_58	eggNOG-mapper	1122128.AUEE01000007_gene1660	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1498568_58	Pfam	PF00692	dUTPase	dUTPase
UHGV-1498568_58	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1498568_58	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1498568_60	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1498568_60	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1498568_60	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-1498568_60	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-1498568_60	Pfam	PF13476	AAA domain	AAA_23
UHGV-1498568_60	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1498568_60	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1498568_61	Structural annotation	PF18300, COG5475	NA	NA
UHGV-1498568_63	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1498568_63	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1498568_63	UniRef90	UniRef90_A0A646FUA9	Recombinase	NA
UHGV-1498568_63	eggNOG-mapper	449673.BACSTE_02215	RecT family	NA
UHGV-1498568_63	Pfam	PF03837	RecT family	RecT
UHGV-1498568_63	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1498568_63	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1498568_63	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1498568_64	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1498568_64	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-1498568_64	eggNOG-mapper	1235788.C802_00050	Metallo-beta-lactamase superfamily	NA
UHGV-1498568_64	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1498568_64	Structural annotation	PF12706, MF_00457, NF041851, COG2220	NA	NA
UHGV-1498568_65	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1498568_66	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1498568_66	UniRef90	UniRef90_A0A840TPV7	NA	NA
UHGV-1498568_70	PHROG	phrog_17873	NA	unknown function
UHGV-1498568_71	PHROG	phrog_24381	NA	unknown function
UHGV-1498568_72	Structural annotation	PF09465, NF005100	NA	NA
UHGV-1498568_73	Pfam	PF20600	Exodeoxyribonuclease X-like C-terminal	ExoX-like_C