UHGV-1499681

Genome information

vOTU vOTU-031983

Genome length 16,009 bps

CDS count 24

Completeness 75.31% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-1499681
vOTU ID	vOTU-031983
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0105024
BioSample	SAMEA2466990
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.96
Jumbo phage	No

Genome content
Genome length	16,009 bps
GC content	47.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	88.68%
Average CDS length	593.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1499681_1	PHROG	phrog_4492	tail fiber protein	tail
UHGV-1499681_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1499681_4	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1499681_4	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-1499681_4	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-1499681_5	PHROG	phrog_2038	upper collar connector	connector
UHGV-1499681_5	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-1499681_5	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-1499681_5	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1499681_5	Structural annotation	PF05352, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1499681_6	PHROG	phrog_2248	tail protein	tail
UHGV-1499681_6	UniRef90	UniRef90_A0A843GL83	Caud_tail_N domain-containing protein	NA
UHGV-1499681_6	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-1499681_6	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1499681_6	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1499681_6	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1499681_7	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1499681_7	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-1499681_7	eggNOG-mapper	1309583.M4W8D1_9CAUD	viral capsid	NA
UHGV-1499681_7	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1499681_7	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1499681_11	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-1499681_11	Structural annotation	PF14207	NA	NA
UHGV-1499681_15	Structural annotation	PF13763	NA	NA
UHGV-1499681_16	Structural annotation	PF17548	NA	NA
UHGV-1499681_17	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1499681_17	Structural annotation	PF17427	NA	NA
UHGV-1499681_18	Structural annotation	PF05435	NA	NA
UHGV-1499681_19	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1499681_19	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1499681_19	UniRef90	UniRef90_A0A316SF05	DNA-directed DNA polymerase	NA
UHGV-1499681_19	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-1499681_19	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1499681_19	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1499681_20	PHROG	phrog_2150	terminase	head and packaging
UHGV-1499681_20	UniRef90	UniRef90_A0A843GP34	Phage DNA encapsidation protein	NA
UHGV-1499681_20	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1499681_20	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1499681_20	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1499681_22	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1499681_22	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-1499681_22	UniRef90	UniRef90_UPI001297D0F3	M23 family metallopeptidase	NA
UHGV-1499681_22	eggNOG-mapper	411467.BACCAP_03464	Peptidase family M23	NA
UHGV-1499681_22	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1499681_22	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-1499681_22	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-1499681_24	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1499681_24	PHROG	phrog_3088	amidase	lysis
UHGV-1499681_24	UniRef90	UniRef90_UPI0019676D30	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1499681_24	eggNOG-mapper	1118054.CAGW01000085_gene4649	Ami_2	NA
UHGV-1499681_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1499681_24	Pfam	PF05036	SPOR domain	SPOR
UHGV-1499681_24	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1499681_24	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA